Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 HES6-204ENST00000409182 863 ntTSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLRN3Q8NCR9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CLRN3Q8NCR9 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
CLRN3Q8NCR9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
CLRN3Q8NCR9 AP001271.2-201ENST00000624018 1556 ntBASIC15.02■□□□□ -0
CLRN3Q8NCR9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
CLRN3Q8NCR9 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLRN3Q8NCR9 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLRN3Q8NCR9 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLRN3Q8NCR9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLRN3Q8NCR9 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.02■□□□□ -0
CLRN3Q8NCR9 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
CLRN3Q8NCR9 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
CLRN3Q8NCR9 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLRN3Q8NCR9 PCDHB17P-201ENST00000539533 2393 ntBASIC15.02■□□□□ -0
CLRN3Q8NCR9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.02■□□□□ -0
CLRN3Q8NCR9 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC15.02■□□□□ -0
CLRN3Q8NCR9 MTDHP2-201ENST00000601468 714 ntBASIC15.02■□□□□ -0
CLRN3Q8NCR9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC15.02■□□□□ -0
CLRN3Q8NCR9 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 AC023824.1-201ENST00000562945 2975 ntBASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLRN3Q8NCR9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms