Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP48Q86UV5 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP48Q86UV5 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
USP48Q86UV5 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP48Q86UV5 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
USP48Q86UV5 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
USP48Q86UV5 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
USP48Q86UV5 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
USP48Q86UV5 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC23.03■■□□□ 1.28
USP48Q86UV5 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
USP48Q86UV5 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC23.03■■□□□ 1.28
USP48Q86UV5 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
USP48Q86UV5 AP000523.1-201ENST00000398242 1049 ntBASIC23.03■■□□□ 1.28
USP48Q86UV5 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC23.03■■□□□ 1.28
USP48Q86UV5 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
USP48Q86UV5 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC23.03■■□□□ 1.28
USP48Q86UV5 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC23.03■■□□□ 1.28
USP48Q86UV5 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP48Q86UV5 LINC01465-201ENST00000408887 1940 ntBASIC23.02■■□□□ 1.28
USP48Q86UV5 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
USP48Q86UV5 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP48Q86UV5 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC23.02■■□□□ 1.28
USP48Q86UV5 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC23.02■■□□□ 1.28
USP48Q86UV5 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC23.02■■□□□ 1.28
USP48Q86UV5 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP48Q86UV5 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC23.02■■□□□ 1.28
USP48Q86UV5 SPDYE13P-201ENST00000445314 798 ntBASIC23.02■■□□□ 1.28
USP48Q86UV5 GLRB-205ENST00000512619 728 ntTSL 3 BASIC23.02■■□□□ 1.28
USP48Q86UV5 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
USP48Q86UV5 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC23.02■■□□□ 1.28
USP48Q86UV5 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP48Q86UV5 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC23.02■■□□□ 1.28
USP48Q86UV5 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
USP48Q86UV5 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP48Q86UV5 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
USP48Q86UV5 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
USP48Q86UV5 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP48Q86UV5 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP48Q86UV5 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
USP48Q86UV5 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.01■■□□□ 1.27
USP48Q86UV5 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC23.01■■□□□ 1.27
USP48Q86UV5 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
USP48Q86UV5 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
USP48Q86UV5 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC23.01■■□□□ 1.27
USP48Q86UV5 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 SPDYE15P-201ENST00000424157 909 ntBASIC23.01■■□□□ 1.27
USP48Q86UV5 PHB2-202ENST00000440277 996 ntTSL 5 BASIC23.01■■□□□ 1.27
USP48Q86UV5 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC23.01■■□□□ 1.27
USP48Q86UV5 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC23.01■■□□□ 1.27
USP48Q86UV5 AC092329.2-201ENST00000598402 547 ntBASIC23.01■■□□□ 1.27
USP48Q86UV5 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC23.01■■□□□ 1.27
USP48Q86UV5 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC23.01■■□□□ 1.27
USP48Q86UV5 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC23.01■■□□□ 1.27
USP48Q86UV5 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC23.01■■□□□ 1.27
USP48Q86UV5 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP48Q86UV5 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC23.01■■□□□ 1.27
USP48Q86UV5 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
USP48Q86UV5 Z82202.1-201ENST00000623446 1880 ntBASIC23■■□□□ 1.27
USP48Q86UV5 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC23■■□□□ 1.27
USP48Q86UV5 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23■■□□□ 1.27
USP48Q86UV5 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
USP48Q86UV5 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
USP48Q86UV5 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC23■■□□□ 1.27
USP48Q86UV5 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC23■■□□□ 1.27
USP48Q86UV5 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC23■■□□□ 1.27
USP48Q86UV5 UNC93B7-201ENST00000509439 705 ntBASIC23■■□□□ 1.27
USP48Q86UV5 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC23■■□□□ 1.27
USP48Q86UV5 CR769767.2-201ENST00000622735 460 ntBASIC23■■□□□ 1.27
USP48Q86UV5 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC23■■□□□ 1.27
USP48Q86UV5 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC23■■□□□ 1.27
USP48Q86UV5 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
USP48Q86UV5 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC23■■□□□ 1.27
USP48Q86UV5 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC23■■□□□ 1.27
USP48Q86UV5 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
USP48Q86UV5 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC23■■□□□ 1.27
USP48Q86UV5 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms