Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SH3RF1Q7Z6J0 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SH3RF1Q7Z6J0 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SH3RF1Q7Z6J0 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SH3RF1Q7Z6J0 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.58■■□□□ 1.04
SH3RF1Q7Z6J0 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SH3RF1Q7Z6J0 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SH3RF1Q7Z6J0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 IRX1P1-201ENST00000438849 1838 ntBASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SH3RF1Q7Z6J0 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 PRSS44-201ENST00000515154 1146 ntBASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 AC069148.1-201ENST00000608741 768 ntBASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.56■■□□□ 1.04
SH3RF1Q7Z6J0 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 AC140113.3-201ENST00000605663 199 ntBASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 AL031432.5-201ENST00000641059 760 ntBASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SH3RF1Q7Z6J0 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms