Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD3P31249 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD3P31249 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD3P31249 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD3P31249 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HOXD3P31249 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.56□□□□□ -0.08
HOXD3P31249 AL023803.3-201ENST00000615559 522 ntBASIC14.56□□□□□ -0.08
HOXD3P31249 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD3P31249 AC010653.2-201ENST00000623505 997 ntBASIC14.56□□□□□ -0.08
HOXD3P31249 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 MYC-208ENST00000641036 567 ntBASIC14.56□□□□□ -0.08
HOXD3P31249 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HOXD3P31249 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 AC092338.2-201ENST00000568827 1415 ntBASIC14.56□□□□□ -0.08
HOXD3P31249 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXD3P31249 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD3P31249 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD3P31249 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD3P31249 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 AC116562.4-201ENST00000641316 2276 ntBASIC14.55□□□□□ -0.08
HOXD3P31249 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HOXD3P31249 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD3P31249 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD3P31249 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 AL359075.1-203ENST00000462729 1002 ntBASIC14.55□□□□□ -0.08
HOXD3P31249 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 KRT18P56-201ENST00000507275 550 ntBASIC14.55□□□□□ -0.08
HOXD3P31249 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD3P31249 AL353719.1-201ENST00000566847 864 ntBASIC14.55□□□□□ -0.08
HOXD3P31249 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 AC140113.3-201ENST00000605663 199 ntBASIC14.55□□□□□ -0.08
HOXD3P31249 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD3P31249 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC14.55□□□□□ -0.08
HOXD3P31249 AC093458.2-201ENST00000623150 629 ntBASIC14.55□□□□□ -0.08
HOXD3P31249 AL023973.1-201ENST00000624619 620 ntBASIC14.55□□□□□ -0.08
HOXD3P31249 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD3P31249 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD3P31249 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD3P31249 IRX1P1-201ENST00000438849 1838 ntBASIC14.55□□□□□ -0.08
HOXD3P31249 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HOXD3P31249 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HOXD3P31249 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HOXD3P31249 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD3P31249 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD3P31249 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC14.54□□□□□ -0.08
HOXD3P31249 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD3P31249 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD3P31249 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.54□□□□□ -0.08
HOXD3P31249 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC14.54□□□□□ -0.08
HOXD3P31249 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD3P31249 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD3P31249 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC14.54□□□□□ -0.08
HOXD3P31249 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms