Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A1P20908 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
COL5A1P20908 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.08■□□□□ 0.48
COL5A1P20908 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.07■□□□□ 0.48
COL5A1P20908 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.07■□□□□ 0.48
COL5A1P20908 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.07■□□□□ 0.48
COL5A1P20908 FOSL1P1-201ENST00000511041 816 ntBASIC18.07■□□□□ 0.48
COL5A1P20908 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.07■□□□□ 0.48
COL5A1P20908 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL5A1P20908 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.07■□□□□ 0.48
COL5A1P20908 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.07■□□□□ 0.48
COL5A1P20908 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.07■□□□□ 0.48
COL5A1P20908 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL5A1P20908 AL121912.1-201ENST00000603683 238 ntBASIC18.07■□□□□ 0.48
COL5A1P20908 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.07■□□□□ 0.48
COL5A1P20908 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL5A1P20908 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
COL5A1P20908 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
COL5A1P20908 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.06■□□□□ 0.48
COL5A1P20908 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.06■□□□□ 0.48
COL5A1P20908 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.06■□□□□ 0.48
COL5A1P20908 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL5A1P20908 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 MRPL3P1-201ENST00000400109 1033 ntBASIC18.06■□□□□ 0.48
COL5A1P20908 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.06■□□□□ 0.48
COL5A1P20908 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.06■□□□□ 0.48
COL5A1P20908 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 AC006538.3-201ENST00000612495 578 ntBASIC18.06■□□□□ 0.48
COL5A1P20908 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.06■□□□□ 0.48
COL5A1P20908 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.06■□□□□ 0.48
COL5A1P20908 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A1P20908 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.06■□□□□ 0.48
COL5A1P20908 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 AP000593.1-201ENST00000393668 712 ntBASIC18.05■□□□□ 0.48
COL5A1P20908 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.05■□□□□ 0.48
COL5A1P20908 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.05■□□□□ 0.48
COL5A1P20908 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.05■□□□□ 0.48
COL5A1P20908 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.05■□□□□ 0.48
COL5A1P20908 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 AC091304.2-201ENST00000564639 760 ntBASIC18.05■□□□□ 0.48
COL5A1P20908 Z69720.1-201ENST00000601483 472 ntBASIC18.05■□□□□ 0.48
COL5A1P20908 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.05■□□□□ 0.48
COL5A1P20908 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.05■□□□□ 0.48
COL5A1P20908 TREX1-205ENST00000625293 1783 ntBASIC18.05■□□□□ 0.48
COL5A1P20908 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.05■□□□□ 0.48
COL5A1P20908 KRT16P4-201ENST00000453883 522 ntBASIC18.05■□□□□ 0.48
COL5A1P20908 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.05■□□□□ 0.48
COL5A1P20908 AC099336.1-202ENST00000602961 463 ntBASIC18.05■□□□□ 0.48
COL5A1P20908 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A1P20908 AL592071.1-201ENST00000611956 408 ntBASIC18.05■□□□□ 0.48
COL5A1P20908 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL5A1P20908 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A1P20908 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 HLA-A-201ENST00000376802 1334 ntBASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms