Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RNF40O75150 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.29■□□□□ 0.84
RNF40O75150 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.29■□□□□ 0.84
RNF40O75150 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.29■□□□□ 0.84
RNF40O75150 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF40O75150 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF40O75150 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RNF40O75150 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.29■□□□□ 0.84
RNF40O75150 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RNF40O75150 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.29■□□□□ 0.84
RNF40O75150 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
RNF40O75150 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RNF40O75150 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.28■□□□□ 0.84
RNF40O75150 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.28■□□□□ 0.84
RNF40O75150 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
RNF40O75150 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RNF40O75150 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.28■□□□□ 0.84
RNF40O75150 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF40O75150 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF40O75150 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.28■□□□□ 0.84
RNF40O75150 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RNF40O75150 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF40O75150 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF40O75150 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF40O75150 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
RNF40O75150 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
RNF40O75150 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RNF40O75150 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
RNF40O75150 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.27■□□□□ 0.84
RNF40O75150 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RNF40O75150 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RNF40O75150 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 AC090164.3-201ENST00000610780 2143 ntBASIC20.27■□□□□ 0.84
RNF40O75150 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.27■□□□□ 0.84
RNF40O75150 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 MIR1238-201ENST00000408483 83 ntBASIC20.27■□□□□ 0.84
RNF40O75150 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.27■□□□□ 0.84
RNF40O75150 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 KRT18P35-201ENST00000510488 1269 ntBASIC20.27■□□□□ 0.84
RNF40O75150 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.27■□□□□ 0.84
RNF40O75150 AL031963.3-201ENST00000606441 850 ntBASIC20.27■□□□□ 0.84
RNF40O75150 AC005363.2-201ENST00000618631 242 ntBASIC20.27■□□□□ 0.84
RNF40O75150 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.27■□□□□ 0.84
RNF40O75150 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 NOC2LP1-202ENST00000452600 2235 ntBASIC20.27■□□□□ 0.84
RNF40O75150 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RNF40O75150 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RNF40O75150 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RNF40O75150 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
RNF40O75150 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RNF40O75150 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RNF40O75150 AC068880.1-201ENST00000507289 2297 ntBASIC20.27■□□□□ 0.83
RNF40O75150 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF40O75150 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 AC009237.14-201ENST00000609975 1594 ntBASIC20.26■□□□□ 0.83
RNF40O75150 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RNF40O75150 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 CR392000.1-201ENST00000624770 1228 ntBASIC20.26■□□□□ 0.83
RNF40O75150 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF40O75150 AC092865.7-201ENST00000641832 219 ntBASIC20.26■□□□□ 0.83
RNF40O75150 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RNF40O75150 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF40O75150 PTBP1P-201ENST00000554374 1601 ntBASIC20.26■□□□□ 0.83
RNF40O75150 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.26■□□□□ 0.83
RNF40O75150 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF40O75150 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF40O75150 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms