Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HDAC3O15379 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HDAC3O15379 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.34■□□□□ 0.53
HDAC3O15379 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.34■□□□□ 0.53
HDAC3O15379 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.34■□□□□ 0.53
HDAC3O15379 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HDAC3O15379 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 MYC-209ENST00000641252 345 ntBASIC18.34■□□□□ 0.53
HDAC3O15379 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HDAC3O15379 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.34■□□□□ 0.53
HDAC3O15379 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
HDAC3O15379 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC3O15379 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDAC3O15379 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
HDAC3O15379 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDAC3O15379 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
HDAC3O15379 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.33■□□□□ 0.53
HDAC3O15379 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
HDAC3O15379 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDAC3O15379 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
HDAC3O15379 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDAC3O15379 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.33■□□□□ 0.53
HDAC3O15379 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
HDAC3O15379 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
HDAC3O15379 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.33■□□□□ 0.52
HDAC3O15379 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.33■□□□□ 0.52
HDAC3O15379 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
HDAC3O15379 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.33■□□□□ 0.52
HDAC3O15379 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.33■□□□□ 0.52
HDAC3O15379 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
HDAC3O15379 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.33■□□□□ 0.52
HDAC3O15379 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 RCC2P6-201ENST00000526625 1557 ntBASIC18.33■□□□□ 0.52
HDAC3O15379 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.33■□□□□ 0.52
HDAC3O15379 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC3O15379 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HDAC3O15379 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
HDAC3O15379 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
HDAC3O15379 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.32■□□□□ 0.52
HDAC3O15379 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.32■□□□□ 0.52
HDAC3O15379 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.32■□□□□ 0.52
HDAC3O15379 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.32■□□□□ 0.52
HDAC3O15379 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.32■□□□□ 0.52
HDAC3O15379 MIR4758-201ENST00000577688 71 ntBASIC18.32■□□□□ 0.52
HDAC3O15379 AC008687.6-201ENST00000596318 630 ntBASIC18.32■□□□□ 0.52
HDAC3O15379 HLA-A-209ENST00000638375 975 ntBASIC18.32■□□□□ 0.52
HDAC3O15379 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 AL499627.1-201ENST00000569373 2188 ntBASIC18.32■□□□□ 0.52
HDAC3O15379 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HDAC3O15379 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC3O15379 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.31■□□□□ 0.52
HDAC3O15379 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.31■□□□□ 0.52
HDAC3O15379 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
HDAC3O15379 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HDAC3O15379 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC3O15379 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC3O15379 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC3O15379 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.31■□□□□ 0.52
HDAC3O15379 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.31■□□□□ 0.52
HDAC3O15379 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.31■□□□□ 0.52
HDAC3O15379 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HDAC3O15379 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC3O15379 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.31■□□□□ 0.52
HDAC3O15379 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.31■□□□□ 0.52
HDAC3O15379 MTMR9LP-203ENST00000426597 1545 ntBASIC18.31■□□□□ 0.52
HDAC3O15379 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms