Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 ZNRF2P3-201ENST00000424200 374 ntBASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 BID-214ENST00000617586 542 ntTSL 5 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USH1CQ9Y6N9 FEM1AP3-201ENST00000403722 1741 ntBASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.77■□□□□ 0.6
USH1CQ9Y6N9 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
USH1CQ9Y6N9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 GPX1P1-201ENST00000388829 606 ntBASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 AC011767.1-201ENST00000617410 1153 ntBASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
USH1CQ9Y6N9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 AC034268.1-201ENST00000441047 882 ntBASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 LINC00896-202ENST00000609602 2128 ntBASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 OR10C1-204ENST00000622521 1039 ntBASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms