Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 AC068880.1-201ENST00000507289 2297 ntBASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 AC092666.2-201ENST00000613287 246 ntBASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIMA1Q9UHB6 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 PRSS44-201ENST00000515154 1146 ntBASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMA1Q9UHB6 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 AC004980.1-204ENST00000429707 299 ntBASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 RNA5SP413-201ENST00000516373 109 ntBASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.6■□□□□ 0.89
LIMA1Q9UHB6 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMA1Q9UHB6 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms