Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 AC233702.5-201ENST00000584107 538 ntBASIC19.49■□□□□ 0.71
PCDH9Q9HC56 Z99916.2-201ENST00000604037 246 ntBASIC19.49■□□□□ 0.71
PCDH9Q9HC56 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCDH9Q9HC56 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.48■□□□□ 0.71
PCDH9Q9HC56 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 AP001412.1-201ENST00000608405 714 ntBASIC19.48■□□□□ 0.71
PCDH9Q9HC56 CR392000.1-201ENST00000624770 1228 ntBASIC19.48■□□□□ 0.71
PCDH9Q9HC56 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 KRT16P1-201ENST00000399124 1418 ntBASIC19.48■□□□□ 0.71
PCDH9Q9HC56 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
PCDH9Q9HC56 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 KRT8P41-201ENST00000533985 1514 ntBASIC19.47■□□□□ 0.71
PCDH9Q9HC56 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 MIR718-201ENST00000390190 70 ntBASIC19.47■□□□□ 0.71
PCDH9Q9HC56 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 AC131212.4-201ENST00000623606 975 ntBASIC19.47■□□□□ 0.71
PCDH9Q9HC56 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDH9Q9HC56 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 FAM197Y1-201ENST00000421178 764 ntBASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms