Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.3■□□□□ 0.36
TIMP4Q99727 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.3■□□□□ 0.36
TIMP4Q99727 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.3■□□□□ 0.36
TIMP4Q99727 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TIMP4Q99727 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TIMP4Q99727 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TIMP4Q99727 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.3■□□□□ 0.36
TIMP4Q99727 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.3■□□□□ 0.36
TIMP4Q99727 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.3■□□□□ 0.36
TIMP4Q99727 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TIMP4Q99727 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TIMP4Q99727 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TIMP4Q99727 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TIMP4Q99727 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TIMP4Q99727 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TIMP4Q99727 AC026471.1-201ENST00000564629 3026 ntBASIC17.29■□□□□ 0.36
TIMP4Q99727 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.29■□□□□ 0.36
TIMP4Q99727 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.29■□□□□ 0.36
TIMP4Q99727 TERF1P1-201ENST00000311003 1181 ntBASIC17.29■□□□□ 0.36
TIMP4Q99727 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 INGX-201ENST00000359239 846 ntBASIC17.29■□□□□ 0.36
TIMP4Q99727 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.29■□□□□ 0.36
TIMP4Q99727 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.29■□□□□ 0.36
TIMP4Q99727 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.29■□□□□ 0.36
TIMP4Q99727 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.29■□□□□ 0.36
TIMP4Q99727 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.29■□□□□ 0.36
TIMP4Q99727 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TIMP4Q99727 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TIMP4Q99727 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TIMP4Q99727 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TIMP4Q99727 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 SLC25A1P2-201ENST00000430693 912 ntBASIC17.28■□□□□ 0.36
TIMP4Q99727 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TIMP4Q99727 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.28■□□□□ 0.36
TIMP4Q99727 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.28■□□□□ 0.36
TIMP4Q99727 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.28■□□□□ 0.36
TIMP4Q99727 AC116562.4-202ENST00000641738 218 ntBASIC17.28■□□□□ 0.36
TIMP4Q99727 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 AC073508.3-201ENST00000619697 1419 ntBASIC17.28■□□□□ 0.36
TIMP4Q99727 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.28■□□□□ 0.36
TIMP4Q99727 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.28■□□□□ 0.36
TIMP4Q99727 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TIMP4Q99727 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.28■□□□□ 0.36
TIMP4Q99727 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
TIMP4Q99727 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TIMP4Q99727 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.27■□□□□ 0.36
TIMP4Q99727 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
TIMP4Q99727 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TIMP4Q99727 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TIMP4Q99727 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.27■□□□□ 0.36
TIMP4Q99727 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.27■□□□□ 0.36
TIMP4Q99727 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TIMP4Q99727 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
TIMP4Q99727 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.27■□□□□ 0.36
TIMP4Q99727 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TIMP4Q99727 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TIMP4Q99727 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.27■□□□□ 0.36
TIMP4Q99727 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TIMP4Q99727 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TIMP4Q99727 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TIMP4Q99727 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.27■□□□□ 0.36
TIMP4Q99727 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.27■□□□□ 0.36
TIMP4Q99727 CCR12P-201ENST00000446203 998 ntBASIC17.27■□□□□ 0.36
TIMP4Q99727 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.27■□□□□ 0.36
TIMP4Q99727 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.27■□□□□ 0.36
TIMP4Q99727 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms