Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 HMGA1P5-201ENST00000412453 271 ntBASIC18.7■□□□□ 0.58
VPS35Q96QK1 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 ECEL1P3-201ENST00000427961 737 ntBASIC18.7■□□□□ 0.58
VPS35Q96QK1 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VPS35Q96QK1 AL512353.2-201ENST00000448759 1962 ntBASIC18.7■□□□□ 0.58
VPS35Q96QK1 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS35Q96QK1 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS35Q96QK1 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VPS35Q96QK1 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 SLC25A3P1-201ENST00000443844 931 ntBASIC18.68■□□□□ 0.58
VPS35Q96QK1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 KRT8P32-201ENST00000512863 1461 ntBASIC18.68■□□□□ 0.58
VPS35Q96QK1 AL049812.1-201ENST00000432563 2267 ntBASIC18.68■□□□□ 0.58
VPS35Q96QK1 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS35Q96QK1 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS35Q96QK1 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS35Q96QK1 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
VPS35Q96QK1 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS35Q96QK1 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms