Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.05■□□□□ 0.48
VMP1Q96GC9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.05■□□□□ 0.48
VMP1Q96GC9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 TREX1-205ENST00000625293 1783 ntBASIC18.05■□□□□ 0.48
VMP1Q96GC9 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.05■□□□□ 0.48
VMP1Q96GC9 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.05■□□□□ 0.48
VMP1Q96GC9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.05■□□□□ 0.48
VMP1Q96GC9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
VMP1Q96GC9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VMP1Q96GC9 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
VMP1Q96GC9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VMP1Q96GC9 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VMP1Q96GC9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VMP1Q96GC9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 AC004980.1-204ENST00000429707 299 ntBASIC18.04■□□□□ 0.48
VMP1Q96GC9 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VMP1Q96GC9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VMP1Q96GC9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
VMP1Q96GC9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VMP1Q96GC9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VMP1Q96GC9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VMP1Q96GC9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VMP1Q96GC9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VMP1Q96GC9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.03■□□□□ 0.48
VMP1Q96GC9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VMP1Q96GC9 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VMP1Q96GC9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
VMP1Q96GC9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VMP1Q96GC9 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VMP1Q96GC9 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.02■□□□□ 0.48
VMP1Q96GC9 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.02■□□□□ 0.48
VMP1Q96GC9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
VMP1Q96GC9 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VMP1Q96GC9 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.02■□□□□ 0.48
VMP1Q96GC9 AC116562.2-201ENST00000507042 360 ntBASIC18.02■□□□□ 0.48
VMP1Q96GC9 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.02■□□□□ 0.48
VMP1Q96GC9 AL355075.4-201ENST00000554988 638 ntBASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms