Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 MIR662-201ENST00000384847 95 ntBASIC19.19■□□□□ 0.66
CHFRQ96EP1 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 RNF126P1-202ENST00000569893 925 ntBASIC19.19■□□□□ 0.66
CHFRQ96EP1 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 AL121672.3-201ENST00000608644 468 ntBASIC19.19■□□□□ 0.66
CHFRQ96EP1 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHFRQ96EP1 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHFRQ96EP1 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHFRQ96EP1 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 RN7SL510P-201ENST00000581311 263 ntBASIC19.18■□□□□ 0.66
CHFRQ96EP1 AP002414.4-201ENST00000589764 1148 ntBASIC19.18■□□□□ 0.66
CHFRQ96EP1 AL136038.4-201ENST00000603606 1261 ntBASIC19.18■□□□□ 0.66
CHFRQ96EP1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHFRQ96EP1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHFRQ96EP1 AC008556.1-201ENST00000610908 2040 ntBASIC19.18■□□□□ 0.66
CHFRQ96EP1 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHFRQ96EP1 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.18■□□□□ 0.66
CHFRQ96EP1 AC093525.10-201ENST00000625130 1569 ntBASIC19.18■□□□□ 0.66
CHFRQ96EP1 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHFRQ96EP1 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 PRELID1P1-202ENST00000567272 903 ntBASIC19.17■□□□□ 0.66
CHFRQ96EP1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 AL512353.2-201ENST00000448759 1962 ntBASIC19.17■□□□□ 0.66
CHFRQ96EP1 AL109659.2-201ENST00000606809 1674 ntBASIC19.17■□□□□ 0.66
CHFRQ96EP1 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.17■□□□□ 0.66
CHFRQ96EP1 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHFRQ96EP1 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHFRQ96EP1 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHFRQ96EP1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHFRQ96EP1 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHFRQ96EP1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHFRQ96EP1 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 KRT8P26-201ENST00000534154 1276 ntBASIC19.16■□□□□ 0.66
CHFRQ96EP1 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.16■□□□□ 0.66
CHFRQ96EP1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHFRQ96EP1 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms