Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 ZNF815P-204ENST00000434898 1737 ntBASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 BX664615.1-201ENST00000443558 458 ntBASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 CA15P1-201ENST00000481698 905 ntBASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 AL353719.1-201ENST00000566847 864 ntBASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.16■□□□□ 0.5
CLIP3Q96DZ5 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 AC125437.2-201ENST00000625180 2167 ntBASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 KRT8P11-201ENST00000409686 1436 ntBASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 AC092338.2-201ENST00000568827 1415 ntBASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 AC104417.2-201ENST00000562989 1793 ntBASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 AL023803.3-201ENST00000615559 522 ntBASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.15■□□□□ 0.5
CLIP3Q96DZ5 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CLIP3Q96DZ5 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.14■□□□□ 0.5
CLIP3Q96DZ5 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CLIP3Q96DZ5 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 AK4P3-201ENST00000418260 669 ntBASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 AL512604.3-201ENST00000569583 964 ntBASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 AC006011.2-201ENST00000621313 1158 ntBASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLIP3Q96DZ5 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms