Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 WBP2-203ENST00000433525 928 ntTSL 2 BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 METTL21AP1-201ENST00000438852 635 ntBASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 AP001271.2-201ENST00000624018 1556 ntBASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SMC1BQ8NDV3 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 AC244015.2-201ENST00000616358 1861 ntBASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 CSF3-203ENST00000394148 622 ntTSL 3 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 COA5-202ENST00000409997 557 ntTSL 4 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SMC1BQ8NDV3 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 PMP22-202ENST00000395936 816 ntTSL 3 BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 AC132008.2-207ENST00000454517 770 ntBASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 AC034105.1-201ENST00000563488 319 ntBASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMC1BQ8NDV3 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 IGHGP-201ENST00000390555 1178 ntBASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 AC011840.4-201ENST00000578471 627 ntBASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC22.33■■□□□ 1.17
SMC1BQ8NDV3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
SMC1BQ8NDV3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SMC1BQ8NDV3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.33■■□□□ 1.16
SMC1BQ8NDV3 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
SMC1BQ8NDV3 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC22.33■■□□□ 1.16
SMC1BQ8NDV3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 BNIP3P18-201ENST00000593976 575 ntBASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms