Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 AC012313.10-201ENST00000623509 926 ntBASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 HLA-A-209ENST00000638375 975 ntBASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 FP475955.4-201ENST00000623131 1990 ntBASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 RNF165-205ENST00000588679 2904 ntBASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 AC006333.2-201ENST00000607957 2099 ntBASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 AL441883.1-201ENST00000566170 1045 ntBASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SH3RF1Q7Z6J0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 AL023803.3-201ENST00000615559 522 ntBASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 AL023973.1-201ENST00000624619 620 ntBASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SH3RF1Q7Z6J0 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 KRT18P38-201ENST00000449496 1282 ntBASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 HOMER2P1-201ENST00000455653 964 ntBASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 AL138781.2-201ENST00000617896 1843 ntBASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SH3RF1Q7Z6J0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.05
SH3RF1Q7Z6J0 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms