Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.37■□□□□ 0.85
KRT39Q6A163 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.37■□□□□ 0.85
KRT39Q6A163 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.37■□□□□ 0.85
KRT39Q6A163 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.37■□□□□ 0.85
KRT39Q6A163 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
KRT39Q6A163 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.36■□□□□ 0.85
KRT39Q6A163 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
KRT39Q6A163 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.36■□□□□ 0.85
KRT39Q6A163 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.36■□□□□ 0.85
KRT39Q6A163 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
KRT39Q6A163 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.36■□□□□ 0.85
KRT39Q6A163 AL390955.1-201ENST00000428694 934 ntBASIC20.36■□□□□ 0.85
KRT39Q6A163 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.36■□□□□ 0.85
KRT39Q6A163 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.36■□□□□ 0.85
KRT39Q6A163 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.36■□□□□ 0.85
KRT39Q6A163 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
KRT39Q6A163 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.36■□□□□ 0.85
KRT39Q6A163 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
KRT39Q6A163 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.36■□□□□ 0.85
KRT39Q6A163 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
KRT39Q6A163 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
KRT39Q6A163 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
KRT39Q6A163 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.35■□□□□ 0.85
KRT39Q6A163 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
KRT39Q6A163 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
KRT39Q6A163 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.35■□□□□ 0.85
KRT39Q6A163 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
KRT39Q6A163 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
KRT39Q6A163 MIR1238-201ENST00000408483 83 ntBASIC20.35■□□□□ 0.85
KRT39Q6A163 TSPY15P-201ENST00000457163 923 ntBASIC20.35■□□□□ 0.85
KRT39Q6A163 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.35■□□□□ 0.85
KRT39Q6A163 AC008622.2-201ENST00000617006 1229 ntBASIC20.35■□□□□ 0.85
KRT39Q6A163 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
KRT39Q6A163 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
KRT39Q6A163 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
KRT39Q6A163 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
KRT39Q6A163 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.35■□□□□ 0.85
KRT39Q6A163 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
KRT39Q6A163 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
KRT39Q6A163 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.35■□□□□ 0.85
KRT39Q6A163 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.35■□□□□ 0.85
KRT39Q6A163 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
KRT39Q6A163 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.35■□□□□ 0.85
KRT39Q6A163 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.35■□□□□ 0.85
KRT39Q6A163 AL020996.1-203ENST00000536896 2307 ntBASIC20.35■□□□□ 0.85
KRT39Q6A163 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.34■□□□□ 0.85
KRT39Q6A163 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
KRT39Q6A163 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.34■□□□□ 0.85
KRT39Q6A163 AL138781.2-201ENST00000617896 1843 ntBASIC20.34■□□□□ 0.85
KRT39Q6A163 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.34■□□□□ 0.85
KRT39Q6A163 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT39Q6A163 RCC2P3-201ENST00000418112 1537 ntBASIC20.34■□□□□ 0.85
KRT39Q6A163 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT39Q6A163 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
KRT39Q6A163 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.34■□□□□ 0.85
KRT39Q6A163 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.34■□□□□ 0.85
KRT39Q6A163 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.34■□□□□ 0.85
KRT39Q6A163 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT39Q6A163 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
KRT39Q6A163 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.34■□□□□ 0.85
KRT39Q6A163 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT39Q6A163 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT39Q6A163 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
KRT39Q6A163 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
KRT39Q6A163 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT39Q6A163 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT39Q6A163 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
KRT39Q6A163 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.33■□□□□ 0.85
KRT39Q6A163 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.33■□□□□ 0.85
KRT39Q6A163 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT39Q6A163 SLC25A1P2-201ENST00000430693 912 ntBASIC20.33■□□□□ 0.85
KRT39Q6A163 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT39Q6A163 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT39Q6A163 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT39Q6A163 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.33■□□□□ 0.84
KRT39Q6A163 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.33■□□□□ 0.84
KRT39Q6A163 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
KRT39Q6A163 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
KRT39Q6A163 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
KRT39Q6A163 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
KRT39Q6A163 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT39Q6A163 MTMR9LP-203ENST00000426597 1545 ntBASIC20.32■□□□□ 0.84
KRT39Q6A163 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms