Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.21■□□□□ 0.19
ABCA4P78363 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
ABCA4P78363 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.21■□□□□ 0.19
ABCA4P78363 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
ABCA4P78363 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
ABCA4P78363 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.21■□□□□ 0.19
ABCA4P78363 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
ABCA4P78363 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
ABCA4P78363 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
ABCA4P78363 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
ABCA4P78363 PRELID1P1-202ENST00000567272 903 ntBASIC16.2■□□□□ 0.18
ABCA4P78363 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC16.2■□□□□ 0.18
ABCA4P78363 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.2■□□□□ 0.18
ABCA4P78363 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
ABCA4P78363 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
ABCA4P78363 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.2■□□□□ 0.18
ABCA4P78363 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.2■□□□□ 0.18
ABCA4P78363 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.2■□□□□ 0.18
ABCA4P78363 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.2■□□□□ 0.18
ABCA4P78363 AL157888.1-201ENST00000631930 593 ntBASIC16.2■□□□□ 0.18
ABCA4P78363 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC16.2■□□□□ 0.18
ABCA4P78363 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA4P78363 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.2■□□□□ 0.18
ABCA4P78363 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.19■□□□□ 0.18
ABCA4P78363 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
ABCA4P78363 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.19■□□□□ 0.18
ABCA4P78363 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 BX276092.5-203ENST00000456199 560 ntBASIC16.19■□□□□ 0.18
ABCA4P78363 AL160237.2-201ENST00000556165 472 ntBASIC16.19■□□□□ 0.18
ABCA4P78363 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
ABCA4P78363 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.19■□□□□ 0.18
ABCA4P78363 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
ABCA4P78363 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 AL023284.2-201ENST00000405850 579 ntBASIC16.19■□□□□ 0.18
ABCA4P78363 DRAXINP1-201ENST00000437611 948 ntBASIC16.19■□□□□ 0.18
ABCA4P78363 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.19■□□□□ 0.18
ABCA4P78363 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.19■□□□□ 0.18
ABCA4P78363 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
ABCA4P78363 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.18■□□□□ 0.18
ABCA4P78363 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.18■□□□□ 0.18
ABCA4P78363 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.18■□□□□ 0.18
ABCA4P78363 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.18■□□□□ 0.18
ABCA4P78363 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
ABCA4P78363 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
ABCA4P78363 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
ABCA4P78363 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.18■□□□□ 0.18
ABCA4P78363 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
ABCA4P78363 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.18■□□□□ 0.18
ABCA4P78363 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.18■□□□□ 0.18
ABCA4P78363 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.18■□□□□ 0.18
ABCA4P78363 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.18■□□□□ 0.18
ABCA4P78363 AC092329.2-201ENST00000598402 547 ntBASIC16.18■□□□□ 0.18
ABCA4P78363 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC16.18■□□□□ 0.18
ABCA4P78363 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.18■□□□□ 0.18
ABCA4P78363 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms