Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CDH13P55290 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH13P55290 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH13P55290 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH13P55290 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH13P55290 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH13P55290 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CDH13P55290 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 ESRRAP1-201ENST00000400596 1257 ntBASIC18.46■□□□□ 0.55
CDH13P55290 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH13P55290 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CDH13P55290 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CDH13P55290 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
CDH13P55290 KRT18P6-201ENST00000555540 1265 ntBASIC18.46■□□□□ 0.55
CDH13P55290 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.46■□□□□ 0.55
CDH13P55290 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CDH13P55290 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH13P55290 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH13P55290 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH13P55290 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CDH13P55290 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CDH13P55290 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CDH13P55290 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CDH13P55290 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.45■□□□□ 0.54
CDH13P55290 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH13P55290 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.45■□□□□ 0.54
CDH13P55290 KRT16P5-201ENST00000455284 522 ntBASIC18.45■□□□□ 0.54
CDH13P55290 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.45■□□□□ 0.54
CDH13P55290 Z85996.1-201ENST00000494644 937 ntBASIC18.45■□□□□ 0.54
CDH13P55290 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH13P55290 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH13P55290 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH13P55290 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.45■□□□□ 0.54
CDH13P55290 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH13P55290 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH13P55290 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
CDH13P55290 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH13P55290 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CDH13P55290 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CDH13P55290 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CDH13P55290 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.44■□□□□ 0.54
CDH13P55290 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.44■□□□□ 0.54
CDH13P55290 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.44■□□□□ 0.54
CDH13P55290 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH13P55290 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.44■□□□□ 0.54
CDH13P55290 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
CDH13P55290 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH13P55290 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
CDH13P55290 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH13P55290 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CDH13P55290 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH13P55290 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.43■□□□□ 0.54
CDH13P55290 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH13P55290 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.43■□□□□ 0.54
CDH13P55290 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH13P55290 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.43■□□□□ 0.54
CDH13P55290 AC126763.1-201ENST00000552015 2118 ntBASIC18.43■□□□□ 0.54
CDH13P55290 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CDH13P55290 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDH13P55290 BICD1-207ENST00000551848 1962 ntBASIC18.43■□□□□ 0.54
CDH13P55290 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDH13P55290 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms