Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.59■□□□□ 0.25
CX3CR1P49238 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CX3CR1P49238 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CX3CR1P49238 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CX3CR1P49238 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CX3CR1P49238 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CX3CR1P49238 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CX3CR1P49238 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.59■□□□□ 0.25
CX3CR1P49238 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CX3CR1P49238 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CX3CR1P49238 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CX3CR1P49238 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CX3CR1P49238 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.58■□□□□ 0.25
CX3CR1P49238 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CX3CR1P49238 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.58■□□□□ 0.25
CX3CR1P49238 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.58■□□□□ 0.24
CX3CR1P49238 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.58■□□□□ 0.24
CX3CR1P49238 Z85996.1-201ENST00000494644 937 ntBASIC16.58■□□□□ 0.24
CX3CR1P49238 C1QBPP2-201ENST00000528754 825 ntBASIC16.58■□□□□ 0.24
CX3CR1P49238 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.58■□□□□ 0.24
CX3CR1P49238 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC16.58■□□□□ 0.24
CX3CR1P49238 MIR4651-201ENST00000582622 73 ntBASIC16.58■□□□□ 0.24
CX3CR1P49238 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.58■□□□□ 0.24
CX3CR1P49238 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CX3CR1P49238 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.58■□□□□ 0.24
CX3CR1P49238 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
CX3CR1P49238 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CX3CR1P49238 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.58■□□□□ 0.24
CX3CR1P49238 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CX3CR1P49238 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CX3CR1P49238 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.57■□□□□ 0.24
CX3CR1P49238 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
CX3CR1P49238 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CX3CR1P49238 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.57■□□□□ 0.24
CX3CR1P49238 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.57■□□□□ 0.24
CX3CR1P49238 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.57■□□□□ 0.24
CX3CR1P49238 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 AP002982.1-201ENST00000492365 877 ntBASIC16.57■□□□□ 0.24
CX3CR1P49238 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CX3CR1P49238 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.57■□□□□ 0.24
CX3CR1P49238 AL445675.2-201ENST00000620291 557 ntBASIC16.57■□□□□ 0.24
CX3CR1P49238 AC131212.4-201ENST00000623606 975 ntBASIC16.57■□□□□ 0.24
CX3CR1P49238 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CX3CR1P49238 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CX3CR1P49238 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CX3CR1P49238 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.56■□□□□ 0.24
CX3CR1P49238 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.56■□□□□ 0.24
CX3CR1P49238 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 HTR7P1-201ENST00000538670 1336 ntBASIC16.56■□□□□ 0.24
CX3CR1P49238 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 NIFKP9-201ENST00000419265 221 ntBASIC16.56■□□□□ 0.24
CX3CR1P49238 POU5F1P3-201ENST00000428824 1078 ntBASIC16.56■□□□□ 0.24
CX3CR1P49238 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.56■□□□□ 0.24
CX3CR1P49238 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CX3CR1P49238 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC16.56■□□□□ 0.24
CX3CR1P49238 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC16.56■□□□□ 0.24
CX3CR1P49238 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CX3CR1P49238 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.56■□□□□ 0.24
CX3CR1P49238 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.56■□□□□ 0.24
CX3CR1P49238 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CX3CR1P49238 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CX3CR1P49238 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms