Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
RFX3P48380 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.73■□□□□ 0.43
RFX3P48380 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 AL135905.2-201ENST00000584934 1404 ntBASIC17.72■□□□□ 0.43
RFX3P48380 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.72■□□□□ 0.43
RFX3P48380 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.72■□□□□ 0.43
RFX3P48380 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.72■□□□□ 0.43
RFX3P48380 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.72■□□□□ 0.43
RFX3P48380 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RFX3P48380 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 AC004980.1-204ENST00000429707 299 ntBASIC17.72■□□□□ 0.43
RFX3P48380 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.72■□□□□ 0.43
RFX3P48380 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.72■□□□□ 0.43
RFX3P48380 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.72■□□□□ 0.43
RFX3P48380 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.72■□□□□ 0.43
RFX3P48380 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.72■□□□□ 0.43
RFX3P48380 AL353708.3-201ENST00000610272 989 ntBASIC17.72■□□□□ 0.43
RFX3P48380 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RFX3P48380 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RFX3P48380 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RFX3P48380 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RFX3P48380 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RFX3P48380 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
RFX3P48380 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RFX3P48380 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.71■□□□□ 0.43
RFX3P48380 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.71■□□□□ 0.43
RFX3P48380 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
RFX3P48380 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.71■□□□□ 0.43
RFX3P48380 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.71■□□□□ 0.43
RFX3P48380 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
RFX3P48380 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.71■□□□□ 0.43
RFX3P48380 CD177P1-201ENST00000606252 935 ntBASIC17.71■□□□□ 0.43
RFX3P48380 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.71■□□□□ 0.43
RFX3P48380 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
RFX3P48380 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.71■□□□□ 0.43
RFX3P48380 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RFX3P48380 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
RFX3P48380 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
RFX3P48380 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.71■□□□□ 0.42
RFX3P48380 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.71■□□□□ 0.42
RFX3P48380 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX3P48380 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX3P48380 IRX1P1-201ENST00000438849 1838 ntBASIC17.7■□□□□ 0.42
RFX3P48380 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.7■□□□□ 0.42
RFX3P48380 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.7■□□□□ 0.42
RFX3P48380 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.7■□□□□ 0.42
RFX3P48380 RPS2P55-201ENST00000397318 883 ntBASIC17.7■□□□□ 0.42
RFX3P48380 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.7■□□□□ 0.42
RFX3P48380 AC107956.1-201ENST00000494359 873 ntBASIC17.7■□□□□ 0.42
RFX3P48380 Z85996.1-201ENST00000494644 937 ntBASIC17.7■□□□□ 0.42
RFX3P48380 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.7■□□□□ 0.42
RFX3P48380 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.7■□□□□ 0.42
RFX3P48380 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
RFX3P48380 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX3P48380 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.7■□□□□ 0.42
RFX3P48380 AL031985.4-201ENST00000642138 673 ntBASIC17.7■□□□□ 0.42
RFX3P48380 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms