Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.26■□□□□ 0.35
RFC3P40938 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.26■□□□□ 0.35
RFC3P40938 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.26■□□□□ 0.35
RFC3P40938 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFC3P40938 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.25■□□□□ 0.35
RFC3P40938 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RFC3P40938 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
RFC3P40938 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
RFC3P40938 TSPY21P-201ENST00000433481 731 ntBASIC17.25■□□□□ 0.35
RFC3P40938 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.25■□□□□ 0.35
RFC3P40938 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.25■□□□□ 0.35
RFC3P40938 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.25■□□□□ 0.35
RFC3P40938 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.25■□□□□ 0.35
RFC3P40938 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RFC3P40938 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RFC3P40938 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.25■□□□□ 0.35
RFC3P40938 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.25■□□□□ 0.35
RFC3P40938 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.25■□□□□ 0.35
RFC3P40938 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RFC3P40938 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFC3P40938 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.25■□□□□ 0.35
RFC3P40938 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RFC3P40938 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.24■□□□□ 0.35
RFC3P40938 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.24■□□□□ 0.35
RFC3P40938 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RFC3P40938 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.24■□□□□ 0.35
RFC3P40938 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RFC3P40938 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.24■□□□□ 0.35
RFC3P40938 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.24■□□□□ 0.35
RFC3P40938 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.24■□□□□ 0.35
RFC3P40938 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
RFC3P40938 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.24■□□□□ 0.35
RFC3P40938 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
RFC3P40938 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
RFC3P40938 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
RFC3P40938 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.24■□□□□ 0.35
RFC3P40938 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RFC3P40938 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RFC3P40938 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RFC3P40938 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
RFC3P40938 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
RFC3P40938 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.23■□□□□ 0.35
RFC3P40938 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
RFC3P40938 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 FAM8A6P-201ENST00000407496 1135 ntBASIC17.23■□□□□ 0.35
RFC3P40938 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.23■□□□□ 0.35
RFC3P40938 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.23■□□□□ 0.35
RFC3P40938 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.23■□□□□ 0.35
RFC3P40938 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
RFC3P40938 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.23■□□□□ 0.35
RFC3P40938 AL358472.4-201ENST00000633140 710 ntBASIC17.23■□□□□ 0.35
RFC3P40938 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
RFC3P40938 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.23■□□□□ 0.35
RFC3P40938 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RFC3P40938 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RFC3P40938 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.22■□□□□ 0.35
RFC3P40938 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.22■□□□□ 0.35
RFC3P40938 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
RFC3P40938 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.22■□□□□ 0.35
RFC3P40938 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.22■□□□□ 0.35
RFC3P40938 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFC3P40938 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.22■□□□□ 0.35
RFC3P40938 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms