Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXA9P31269 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXA9P31269 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXA9P31269 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 TREX1-205ENST00000625293 1783 ntBASIC19.62■□□□□ 0.73
HOXA9P31269 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXA9P31269 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXA9P31269 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXA9P31269 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXA9P31269 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXA9P31269 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXA9P31269 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HOXA9P31269 TSPY22P-201ENST00000427496 604 ntBASIC19.62■□□□□ 0.73
HOXA9P31269 MIR3180-4-201ENST00000582223 153 ntBASIC19.62■□□□□ 0.73
HOXA9P31269 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
HOXA9P31269 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HOXA9P31269 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXA9P31269 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA9P31269 AC008556.1-201ENST00000610908 2040 ntBASIC19.61■□□□□ 0.73
HOXA9P31269 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXA9P31269 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA9P31269 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA9P31269 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXA9P31269 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXA9P31269 MIR564-202ENST00000385049 94 ntBASIC19.61■□□□□ 0.73
HOXA9P31269 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXA9P31269 DRAXINP1-201ENST00000437611 948 ntBASIC19.61■□□□□ 0.73
HOXA9P31269 FAAHP1-202ENST00000446499 1238 ntBASIC19.61■□□□□ 0.73
HOXA9P31269 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXA9P31269 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXA9P31269 RN7SL510P-201ENST00000581311 263 ntBASIC19.61■□□□□ 0.73
HOXA9P31269 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXA9P31269 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA9P31269 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA9P31269 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA9P31269 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HOXA9P31269 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXA9P31269 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA9P31269 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA9P31269 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXA9P31269 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
HOXA9P31269 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
HOXA9P31269 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
HOXA9P31269 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA9P31269 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
HOXA9P31269 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXA9P31269 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
HOXA9P31269 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 AC004870.1-201ENST00000315132 882 ntBASIC19.6■□□□□ 0.73
HOXA9P31269 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA9P31269 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXA9P31269 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA9P31269 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXA9P31269 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXA9P31269 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXA9P31269 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.6■□□□□ 0.73
HOXA9P31269 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXA9P31269 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXA9P31269 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXA9P31269 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 KRT8P32-201ENST00000512863 1461 ntBASIC19.6■□□□□ 0.73
HOXA9P31269 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXA9P31269 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA9P31269 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA9P31269 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA9P31269 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA9P31269 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXA9P31269 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA9P31269 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXA9P31269 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXA9P31269 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA9P31269 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXA9P31269 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms