Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AL031985.4-201ENST00000642138 673 ntBASIC17.56■□□□□ 0.4
HMGN4O00479 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 BICD1-207ENST00000551848 1962 ntBASIC17.56■□□□□ 0.4
HMGN4O00479 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGN4O00479 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGN4O00479 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HMGN4O00479 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGN4O00479 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 AC126763.1-201ENST00000552015 2118 ntBASIC17.56■□□□□ 0.4
HMGN4O00479 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGN4O00479 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HMGN4O00479 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.56■□□□□ 0.4
HMGN4O00479 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGN4O00479 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HMGN4O00479 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HMGN4O00479 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HMGN4O00479 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
HMGN4O00479 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGN4O00479 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HMGN4O00479 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
HMGN4O00479 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGN4O00479 AC008040.2-201ENST00000461049 708 ntBASIC17.55■□□□□ 0.4
HMGN4O00479 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
HMGN4O00479 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HMGN4O00479 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGN4O00479 AC073195.1-201ENST00000607241 877 ntBASIC17.55■□□□□ 0.4
HMGN4O00479 AC011298.2-201ENST00000617989 482 ntBASIC17.55■□□□□ 0.4
HMGN4O00479 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 AL359736.2-201ENST00000621992 437 ntBASIC17.55■□□□□ 0.4
HMGN4O00479 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HMGN4O00479 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGN4O00479 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.55■□□□□ 0.4
HMGN4O00479 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGN4O00479 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGN4O00479 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.54■□□□□ 0.4
HMGN4O00479 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.54■□□□□ 0.4
HMGN4O00479 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGN4O00479 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.54■□□□□ 0.4
HMGN4O00479 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 AC130371.2-201ENST00000619443 611 ntBASIC17.54■□□□□ 0.4
HMGN4O00479 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.54■□□□□ 0.4
HMGN4O00479 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HMGN4O00479 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.54■□□□□ 0.4
HMGN4O00479 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGN4O00479 AC073592.3-201ENST00000625118 1834 ntBASIC17.54■□□□□ 0.4
HMGN4O00479 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGN4O00479 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 AL499627.1-201ENST00000569373 2188 ntBASIC17.53■□□□□ 0.4
HMGN4O00479 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 AL390961.4-201ENST00000623958 2535 ntBASIC17.53■□□□□ 0.4
HMGN4O00479 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HMGN4O00479 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HMGN4O00479 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.53■□□□□ 0.4
HMGN4O00479 CKBP1-201ENST00000565489 1086 ntBASIC17.53■□□□□ 0.4
HMGN4O00479 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGN4O00479 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.53■□□□□ 0.4
HMGN4O00479 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HMGN4O00479 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.53■□□□□ 0.4
HMGN4O00479 ITM2C-210ENST00000620962 501 ntBASIC17.53■□□□□ 0.4
HMGN4O00479 FAM197Y4-202ENST00000622692 608 ntBASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms