Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 AC112907.2-201ENST00000448639 330 ntBASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 HYMAI.1-201ENST00000620949 238 ntBASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 AL161938.1-201ENST00000569833 2180 ntBASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 AC112497.1-201ENST00000624824 639 ntBASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 AL358472.4-201ENST00000633140 710 ntBASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMIM28A0A1B0GU29 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 MIR564-202ENST00000385049 94 ntBASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 SEC1P-202ENST00000473944 940 ntBASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 FAM86EP-206ENST00000510506 987 ntBASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 AL121956.5-201ENST00000625261 221 ntBASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 AC068587.9-201ENST00000641814 219 ntBASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMIM28A0A1B0GU29 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMIM28A0A1B0GU29 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 AL049812.1-201ENST00000432563 2267 ntBASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms