Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 KRT18P57-201ENST00000443599 1254 ntBASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 AC073508.3-201ENST00000619697 1419 ntBASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 AL049812.1-201ENST00000432563 2267 ntBASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 MIR1224-201ENST00000408193 85 ntBASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 CA15P1-201ENST00000481698 905 ntBASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 AL023803.3-201ENST00000615559 522 ntBASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A3BPQ9Y5P4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 AC010203.1-204ENST00000548782 407 ntBASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 AC092338.2-201ENST00000568827 1415 ntBASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A3BPQ9Y5P4 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 AC007663.1-201ENST00000438948 1240 ntBASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 TSPY17P-201ENST00000450329 467 ntBASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
COL4A3BPQ9Y5P4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 AC093503.3-201ENST00000624917 2352 ntBASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 HMGA1P5-201ENST00000412453 271 ntBASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A3BPQ9Y5P4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms