Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMA1Q9UHB6 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 AL499627.1-201ENST00000569373 2188 ntBASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 KRT16P5-201ENST00000455284 522 ntBASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 KRT8P32-201ENST00000512863 1461 ntBASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMA1Q9UHB6 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 AC026366.1-201ENST00000488803 879 ntBASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMA1Q9UHB6 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIMA1Q9UHB6 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIMA1Q9UHB6 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMA1Q9UHB6 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMA1Q9UHB6 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMA1Q9UHB6 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMA1Q9UHB6 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 AL355802.2-201ENST00000402069 882 ntBASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 AC090192.1-201ENST00000517740 490 ntBASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 AL445675.2-201ENST00000620291 557 ntBASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 AL023875.1-201ENST00000640777 796 ntBASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 AC005332.8-201ENST00000622750 2735 ntBASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMA1Q9UHB6 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 KRT8P3-201ENST00000519669 1449 ntBASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 KRASP1-201ENST00000407852 552 ntBASIC20.63■□□□□ 0.89
LIMA1Q9UHB6 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms