Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC120498.9-201ENST00000339021 3867 ntBASIC20.29■□□□□ 0.84
SIX2Q9NPC8 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 AC012618.2-201ENST00000428058 849 ntBASIC20.28■□□□□ 0.84
SIX2Q9NPC8 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 NUDT16P1-203ENST00000513809 620 ntBASIC20.28■□□□□ 0.84
SIX2Q9NPC8 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 AC008622.2-201ENST00000617006 1229 ntBASIC20.28■□□□□ 0.84
SIX2Q9NPC8 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX2Q9NPC8 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.27■□□□□ 0.84
SIX2Q9NPC8 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 AC096733.2-201ENST00000609937 1394 ntBASIC20.27■□□□□ 0.84
SIX2Q9NPC8 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 Z99916.2-201ENST00000604037 246 ntBASIC20.27■□□□□ 0.84
SIX2Q9NPC8 AL049637.2-201ENST00000641778 930 ntBASIC20.27■□□□□ 0.84
SIX2Q9NPC8 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SIX2Q9NPC8 AL357033.4-201ENST00000617703 1807 ntBASIC20.27■□□□□ 0.84
SIX2Q9NPC8 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.27■□□□□ 0.83
SIX2Q9NPC8 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
SIX2Q9NPC8 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SIX2Q9NPC8 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
SIX2Q9NPC8 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.27■□□□□ 0.83
SIX2Q9NPC8 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.26■□□□□ 0.83
SIX2Q9NPC8 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 AC135050.7-201ENST00000624508 2218 ntBASIC20.26■□□□□ 0.83
SIX2Q9NPC8 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 BICD1-207ENST00000551848 1962 ntBASIC20.26■□□□□ 0.83
SIX2Q9NPC8 RCC2P3-201ENST00000418112 1537 ntBASIC20.26■□□□□ 0.83
SIX2Q9NPC8 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SIX2Q9NPC8 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX2Q9NPC8 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.25■□□□□ 0.83
SIX2Q9NPC8 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
SIX2Q9NPC8 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX2Q9NPC8 AC073592.3-201ENST00000625118 1834 ntBASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms