Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 EDA-201ENST00000338901 1233 ntBASIC17.8■□□□□ 0.44
NR1H4Q96RI1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 AP001330.3-201ENST00000520123 633 ntBASIC17.8■□□□□ 0.44
NR1H4Q96RI1 AL355001.2-201ENST00000620617 1191 ntBASIC17.8■□□□□ 0.44
NR1H4Q96RI1 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.8■□□□□ 0.44
NR1H4Q96RI1 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 AF213884.3-201ENST00000563833 479 ntBASIC17.79■□□□□ 0.44
NR1H4Q96RI1 AC110285.6-201ENST00000617652 491 ntBASIC17.79■□□□□ 0.44
NR1H4Q96RI1 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.79■□□□□ 0.44
NR1H4Q96RI1 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NR1H4Q96RI1 RASA4CP-201ENST00000424092 1398 ntBASIC17.78■□□□□ 0.44
NR1H4Q96RI1 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.77■□□□□ 0.44
NR1H4Q96RI1 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
NR1H4Q96RI1 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
NR1H4Q96RI1 AC011676.5-201ENST00000624864 2660 ntBASIC17.77■□□□□ 0.44
NR1H4Q96RI1 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
NR1H4Q96RI1 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NR1H4Q96RI1 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.77■□□□□ 0.44
NR1H4Q96RI1 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms