Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 KRT17P3-201ENST00000420566 1262 ntBASIC14.17□□□□□ -0.14
LINC00477Q96M19 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 F2R-202ENST00000505600 442 ntTSL 2 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 C1QL1P1-201ENST00000568105 661 ntBASIC14.17□□□□□ -0.14
LINC00477Q96M19 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 HLA-A-209ENST00000638375 975 ntBASIC14.17□□□□□ -0.14
LINC00477Q96M19 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 ANO7L1-203ENST00000602586 1720 ntBASIC14.16□□□□□ -0.14
LINC00477Q96M19 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.16□□□□□ -0.14
LINC00477Q96M19 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 AC104771.1-201ENST00000603335 964 ntBASIC14.16□□□□□ -0.14
LINC00477Q96M19 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 Six3os1_6.1-201ENST00000620790 196 ntBASIC14.16□□□□□ -0.14
LINC00477Q96M19 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 AC009113.1-201ENST00000570267 2443 ntBASIC14.16□□□□□ -0.14
LINC00477Q96M19 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 PKD1P1-201ENST00000458669 6805 ntBASIC14.16□□□□□ -0.14
LINC00477Q96M19 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
LINC00477Q96M19 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00477Q96M19 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 TSPY23P-201ENST00000440136 739 ntBASIC14.15□□□□□ -0.14
LINC00477Q96M19 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00477Q96M19 GLRB-205ENST00000512619 728 ntTSL 3 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
LINC00477Q96M19 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms