Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTP4A1Q93096 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTP4A1Q93096 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
PTP4A1Q93096 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTP4A1Q93096 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC16.98■□□□□ 0.31
PTP4A1Q93096 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTP4A1Q93096 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.98■□□□□ 0.31
PTP4A1Q93096 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
PTP4A1Q93096 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTP4A1Q93096 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PTP4A1Q93096 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTP4A1Q93096 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTP4A1Q93096 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.98■□□□□ 0.31
PTP4A1Q93096 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PTP4A1Q93096 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
PTP4A1Q93096 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTP4A1Q93096 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTP4A1Q93096 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.97■□□□□ 0.31
PTP4A1Q93096 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 ESRRAP1-201ENST00000400596 1257 ntBASIC16.97■□□□□ 0.31
PTP4A1Q93096 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
PTP4A1Q93096 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTP4A1Q93096 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.96■□□□□ 0.31
PTP4A1Q93096 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.96■□□□□ 0.31
PTP4A1Q93096 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.96■□□□□ 0.31
PTP4A1Q93096 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.96■□□□□ 0.31
PTP4A1Q93096 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.96■□□□□ 0.31
PTP4A1Q93096 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
PTP4A1Q93096 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.96■□□□□ 0.31
PTP4A1Q93096 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTP4A1Q93096 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.96■□□□□ 0.3
PTP4A1Q93096 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTP4A1Q93096 AC126763.1-201ENST00000552015 2118 ntBASIC16.96■□□□□ 0.3
PTP4A1Q93096 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.96■□□□□ 0.3
PTP4A1Q93096 AC073592.3-201ENST00000625118 1834 ntBASIC16.96■□□□□ 0.3
PTP4A1Q93096 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PTP4A1Q93096 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTP4A1Q93096 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTP4A1Q93096 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTP4A1Q93096 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTP4A1Q93096 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTP4A1Q93096 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTP4A1Q93096 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTP4A1Q93096 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.95■□□□□ 0.3
PTP4A1Q93096 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTP4A1Q93096 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTP4A1Q93096 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms