Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
RTF1Q92541 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC24.65■■□□□ 1.54
RTF1Q92541 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
RTF1Q92541 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
RTF1Q92541 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
RTF1Q92541 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
RTF1Q92541 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
RTF1Q92541 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC24.65■■□□□ 1.54
RTF1Q92541 CLN6-204ENST00000564752 900 ntTSL 3 BASIC24.65■■□□□ 1.54
RTF1Q92541 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC24.65■■□□□ 1.54
RTF1Q92541 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC24.65■■□□□ 1.54
RTF1Q92541 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
RTF1Q92541 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
RTF1Q92541 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
RTF1Q92541 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
RTF1Q92541 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC24.65■■□□□ 1.54
RTF1Q92541 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC24.65■■□□□ 1.54
RTF1Q92541 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC24.64■■□□□ 1.54
RTF1Q92541 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
RTF1Q92541 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.54
RTF1Q92541 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC24.64■■□□□ 1.54
RTF1Q92541 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
RTF1Q92541 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC24.64■■□□□ 1.54
RTF1Q92541 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC24.64■■□□□ 1.54
RTF1Q92541 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
RTF1Q92541 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC24.64■■□□□ 1.54
RTF1Q92541 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC24.64■■□□□ 1.54
RTF1Q92541 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.54
RTF1Q92541 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
RTF1Q92541 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC24.64■■□□□ 1.54
RTF1Q92541 SNX5-210ENST00000481323 562 ntTSL 3 BASIC24.64■■□□□ 1.54
RTF1Q92541 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
RTF1Q92541 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC24.64■■□□□ 1.54
RTF1Q92541 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC24.64■■□□□ 1.54
RTF1Q92541 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC24.64■■□□□ 1.54
RTF1Q92541 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC24.64■■□□□ 1.53
RTF1Q92541 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
RTF1Q92541 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
RTF1Q92541 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
RTF1Q92541 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
RTF1Q92541 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
RTF1Q92541 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
RTF1Q92541 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
RTF1Q92541 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC24.63■■□□□ 1.53
RTF1Q92541 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
RTF1Q92541 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
RTF1Q92541 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC24.63■■□□□ 1.53
RTF1Q92541 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC24.63■■□□□ 1.53
RTF1Q92541 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
RTF1Q92541 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
RTF1Q92541 RCC2P3-201ENST00000418112 1537 ntBASIC24.63■■□□□ 1.53
RTF1Q92541 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
RTF1Q92541 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC24.63■■□□□ 1.53
RTF1Q92541 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
RTF1Q92541 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
RTF1Q92541 KRT18P38-201ENST00000449496 1282 ntBASIC24.63■■□□□ 1.53
RTF1Q92541 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC24.63■■□□□ 1.53
RTF1Q92541 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC24.63■■□□□ 1.53
RTF1Q92541 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
RTF1Q92541 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC24.63■■□□□ 1.53
RTF1Q92541 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
RTF1Q92541 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC24.63■■□□□ 1.53
RTF1Q92541 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC24.63■■□□□ 1.53
RTF1Q92541 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RTF1Q92541 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC24.62■■□□□ 1.53
RTF1Q92541 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC24.62■■□□□ 1.53
RTF1Q92541 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC24.62■■□□□ 1.53
RTF1Q92541 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RTF1Q92541 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RTF1Q92541 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
RTF1Q92541 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RTF1Q92541 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC24.62■■□□□ 1.53
RTF1Q92541 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC24.62■■□□□ 1.53
RTF1Q92541 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC24.62■■□□□ 1.53
RTF1Q92541 AL671277.2-201ENST00000458060 996 ntBASIC24.62■■□□□ 1.53
RTF1Q92541 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC24.62■■□□□ 1.53
RTF1Q92541 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC24.62■■□□□ 1.53
RTF1Q92541 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC24.62■■□□□ 1.53
RTF1Q92541 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
RTF1Q92541 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC24.62■■□□□ 1.53
RTF1Q92541 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RTF1Q92541 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
RTF1Q92541 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RTF1Q92541 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
RTF1Q92541 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RTF1Q92541 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC24.61■■□□□ 1.53
RTF1Q92541 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
RTF1Q92541 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RTF1Q92541 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RTF1Q92541 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
RTF1Q92541 STARP1-201ENST00000397973 869 ntBASIC24.61■■□□□ 1.53
RTF1Q92541 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RTF1Q92541 ISCU-203ENST00000431221 799 ntTSL 2 BASIC24.61■■□□□ 1.53
RTF1Q92541 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
RTF1Q92541 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC24.61■■□□□ 1.53
RTF1Q92541 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC24.61■■□□□ 1.53
RTF1Q92541 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
RTF1Q92541 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC24.61■■□□□ 1.53
RTF1Q92541 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
RTF1Q92541 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms