Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4AQ8WYN0 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 AC026366.1-201ENST00000488803 879 ntBASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4AQ8WYN0 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 KRASP1-201ENST00000407852 552 ntBASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 KRT17P3-201ENST00000420566 1262 ntBASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 Z85996.1-201ENST00000494644 937 ntBASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4AQ8WYN0 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ATG4AQ8WYN0 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4AQ8WYN0 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 AL499627.1-201ENST00000569373 2188 ntBASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms