Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 Z69720.1-201ENST00000601483 472 ntBASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CNKSR3Q6P9H4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 LINC00167-201ENST00000530583 1419 ntBASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 AL353801.3-201ENST00000609898 542 ntBASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 AC006538.3-201ENST00000612495 578 ntBASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.31■□□□□ 0.84
CNKSR3Q6P9H4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 KRT16P4-201ENST00000453883 522 ntBASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 AC079776.4-201ENST00000511039 504 ntBASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 GPR32P1-201ENST00000601788 811 ntBASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 AC099336.1-202ENST00000602961 463 ntBASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 PKD1P6-201ENST00000343738 4769 ntBASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 AC007375.3-201ENST00000600936 2314 ntBASIC20.3■□□□□ 0.84
CNKSR3Q6P9H4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 MIR564-202ENST00000385049 94 ntBASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CNKSR3Q6P9H4 Z82202.1-201ENST00000623446 1880 ntBASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CNKSR3Q6P9H4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms