Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 AC093525.10-201ENST00000625130 1569 ntBASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 AL512353.2-201ENST00000448759 1962 ntBASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 AC004980.1-204ENST00000429707 299 ntBASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 FAM197Y4-202ENST00000622692 608 ntBASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 Z98044.1-201ENST00000632503 1764 ntBASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
CCDC40Q4G0X9 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 AL353807.1-201ENST00000427475 662 ntBASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 KSR1P1-201ENST00000446298 240 ntBASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 TSPY20P-201ENST00000450910 630 ntBASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 AL353708.3-201ENST00000610272 989 ntBASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 AC083906.6-201ENST00000641366 219 ntBASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC40Q4G0X9 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 KRT18P29-201ENST00000397031 1267 ntBASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC40Q4G0X9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC40Q4G0X9 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.77■□□□□ 0.91
CCDC40Q4G0X9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC40Q4G0X9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC40Q4G0X9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC40Q4G0X9 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms