Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCPP55072 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
VCPP55072 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCPP55072 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
VCPP55072 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCPP55072 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCPP55072 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.21■□□□□ 0.83
VCPP55072 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VCPP55072 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.21■□□□□ 0.83
VCPP55072 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.21■□□□□ 0.83
VCPP55072 AC011506.1-201ENST00000474329 610 ntBASIC20.21■□□□□ 0.83
VCPP55072 COX11P1-201ENST00000489116 835 ntBASIC20.21■□□□□ 0.83
VCPP55072 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.21■□□□□ 0.83
VCPP55072 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.21■□□□□ 0.83
VCPP55072 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCPP55072 AC026271.3-201ENST00000571884 352 ntBASIC20.21■□□□□ 0.83
VCPP55072 GPALPP1-207ENST00000611650 899 ntBASIC20.21■□□□□ 0.83
VCPP55072 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VCPP55072 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCPP55072 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VCPP55072 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCPP55072 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.21■□□□□ 0.83
VCPP55072 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.21■□□□□ 0.83
VCPP55072 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VCPP55072 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCPP55072 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
VCPP55072 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.2■□□□□ 0.82
VCPP55072 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.2■□□□□ 0.82
VCPP55072 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
VCPP55072 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.2■□□□□ 0.82
VCPP55072 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.2■□□□□ 0.82
VCPP55072 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.2■□□□□ 0.82
VCPP55072 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
VCPP55072 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.2■□□□□ 0.82
VCPP55072 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
VCPP55072 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCPP55072 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.19■□□□□ 0.82
VCPP55072 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.19■□□□□ 0.82
VCPP55072 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.19■□□□□ 0.82
VCPP55072 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.19■□□□□ 0.82
VCPP55072 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VCPP55072 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.19■□□□□ 0.82
VCPP55072 AC069148.1-201ENST00000608741 768 ntBASIC20.19■□□□□ 0.82
VCPP55072 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.19■□□□□ 0.82
VCPP55072 AC011558.1-201ENST00000623459 338 ntBASIC20.19■□□□□ 0.82
VCPP55072 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 AC005332.1-201ENST00000577698 1310 ntBASIC20.19■□□□□ 0.82
VCPP55072 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
VCPP55072 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VCPP55072 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCPP55072 AIRN-201ENST00000601203 4374 ntBASIC20.18■□□□□ 0.82
VCPP55072 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCPP55072 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.18■□□□□ 0.82
VCPP55072 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCPP55072 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCPP55072 SLC25A1P4-201ENST00000567977 778 ntBASIC20.18■□□□□ 0.82
VCPP55072 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.18■□□□□ 0.82
VCPP55072 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.18■□□□□ 0.82
VCPP55072 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.18■□□□□ 0.82
VCPP55072 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.18■□□□□ 0.82
VCPP55072 AC116407.4-201ENST00000623319 1061 ntBASIC20.18■□□□□ 0.82
VCPP55072 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
VCPP55072 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCPP55072 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VCPP55072 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
VCPP55072 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCPP55072 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
VCPP55072 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.18■□□□□ 0.82
VCPP55072 AC004408.2-201ENST00000623613 2777 ntBASIC20.17■□□□□ 0.82
VCPP55072 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.17■□□□□ 0.82
VCPP55072 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VCPP55072 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.17■□□□□ 0.82
VCPP55072 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.17■□□□□ 0.82
VCPP55072 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms