Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.76■□□□□ 0.43
RFX3P48380 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.76■□□□□ 0.43
RFX3P48380 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.76■□□□□ 0.43
RFX3P48380 AC131212.4-201ENST00000623606 975 ntBASIC17.76■□□□□ 0.43
RFX3P48380 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.76■□□□□ 0.43
RFX3P48380 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.76■□□□□ 0.43
RFX3P48380 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
RFX3P48380 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.76■□□□□ 0.43
RFX3P48380 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
RFX3P48380 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.76■□□□□ 0.43
RFX3P48380 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 AL161938.1-201ENST00000569833 2180 ntBASIC17.76■□□□□ 0.43
RFX3P48380 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.75■□□□□ 0.43
RFX3P48380 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.75■□□□□ 0.43
RFX3P48380 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
RFX3P48380 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
RFX3P48380 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
RFX3P48380 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
RFX3P48380 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.75■□□□□ 0.43
RFX3P48380 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 FAM197Y1-201ENST00000421178 764 ntBASIC17.75■□□□□ 0.43
RFX3P48380 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.75■□□□□ 0.43
RFX3P48380 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.75■□□□□ 0.43
RFX3P48380 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.75■□□□□ 0.43
RFX3P48380 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.75■□□□□ 0.43
RFX3P48380 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.75■□□□□ 0.43
RFX3P48380 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RFX3P48380 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.74■□□□□ 0.43
RFX3P48380 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.74■□□□□ 0.43
RFX3P48380 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 KRT16P1-201ENST00000399124 1418 ntBASIC17.74■□□□□ 0.43
RFX3P48380 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.74■□□□□ 0.43
RFX3P48380 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.74■□□□□ 0.43
RFX3P48380 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
RFX3P48380 KSR1P1-201ENST00000446298 240 ntBASIC17.74■□□□□ 0.43
RFX3P48380 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.74■□□□□ 0.43
RFX3P48380 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.74■□□□□ 0.43
RFX3P48380 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
RFX3P48380 AL445675.2-201ENST00000620291 557 ntBASIC17.74■□□□□ 0.43
RFX3P48380 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.74■□□□□ 0.43
RFX3P48380 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.74■□□□□ 0.43
RFX3P48380 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RFX3P48380 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RFX3P48380 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
RFX3P48380 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.73■□□□□ 0.43
RFX3P48380 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
RFX3P48380 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
RFX3P48380 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RFX3P48380 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.73■□□□□ 0.43
RFX3P48380 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.73■□□□□ 0.43
RFX3P48380 AC073195.1-201ENST00000607241 877 ntBASIC17.73■□□□□ 0.43
RFX3P48380 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.73■□□□□ 0.43
RFX3P48380 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms