Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 AC008040.2-201ENST00000461049 708 ntBASIC17.77■□□□□ 0.44
SOX3P41225 AC091390.4-202ENST00000476426 537 ntBASIC17.77■□□□□ 0.44
SOX3P41225 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.77■□□□□ 0.44
SOX3P41225 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.77■□□□□ 0.44
SOX3P41225 FITM1-202ENST00000559294 800 ntBASIC17.77■□□□□ 0.44
SOX3P41225 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SOX3P41225 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.77■□□□□ 0.44
SOX3P41225 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SOX3P41225 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
SOX3P41225 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.77■□□□□ 0.43
SOX3P41225 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SOX3P41225 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.77■□□□□ 0.43
SOX3P41225 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.77■□□□□ 0.43
SOX3P41225 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SOX3P41225 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SOX3P41225 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SOX3P41225 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.76■□□□□ 0.43
SOX3P41225 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.76■□□□□ 0.43
SOX3P41225 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.76■□□□□ 0.43
SOX3P41225 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.76■□□□□ 0.43
SOX3P41225 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SOX3P41225 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.76■□□□□ 0.43
SOX3P41225 AC097488.1-201ENST00000507834 756 ntBASIC17.76■□□□□ 0.43
SOX3P41225 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.76■□□□□ 0.43
SOX3P41225 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SOX3P41225 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.76■□□□□ 0.43
SOX3P41225 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.76■□□□□ 0.43
SOX3P41225 LINC01023-201ENST00000606054 436 ntBASIC17.76■□□□□ 0.43
SOX3P41225 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.76■□□□□ 0.43
SOX3P41225 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SOX3P41225 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.75■□□□□ 0.43
SOX3P41225 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
SOX3P41225 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.75■□□□□ 0.43
SOX3P41225 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.75■□□□□ 0.43
SOX3P41225 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SOX3P41225 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.75■□□□□ 0.43
SOX3P41225 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.75■□□□□ 0.43
SOX3P41225 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.75■□□□□ 0.43
SOX3P41225 FAM207BP-201ENST00000447172 505 ntBASIC17.75■□□□□ 0.43
SOX3P41225 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.75■□□□□ 0.43
SOX3P41225 SLC25A1P4-201ENST00000567977 778 ntBASIC17.75■□□□□ 0.43
SOX3P41225 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.75■□□□□ 0.43
SOX3P41225 AP000692.2-201ENST00000608391 879 ntBASIC17.75■□□□□ 0.43
SOX3P41225 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SOX3P41225 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.75■□□□□ 0.43
SOX3P41225 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.75■□□□□ 0.43
SOX3P41225 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SOX3P41225 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX3P41225 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
SOX3P41225 AL138781.2-201ENST00000617896 1843 ntBASIC17.75■□□□□ 0.43
SOX3P41225 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SOX3P41225 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 AL049812.1-201ENST00000432563 2267 ntBASIC17.74■□□□□ 0.43
SOX3P41225 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.74■□□□□ 0.43
SOX3P41225 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.74■□□□□ 0.43
SOX3P41225 AC005332.8-201ENST00000622750 2735 ntBASIC17.74■□□□□ 0.43
SOX3P41225 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms