Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BDNFP23560 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
BDNFP23560 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BDNFP23560 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BDNFP23560 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BDNFP23560 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.92■□□□□ 0.78
BDNFP23560 ARMC10P1-201ENST00000313754 855 ntBASIC19.92■□□□□ 0.78
BDNFP23560 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.92■□□□□ 0.78
BDNFP23560 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.92■□□□□ 0.78
BDNFP23560 RNF152P1-201ENST00000397754 604 ntBASIC19.92■□□□□ 0.78
BDNFP23560 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
BDNFP23560 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.92■□□□□ 0.78
BDNFP23560 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.92■□□□□ 0.78
BDNFP23560 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.92■□□□□ 0.78
BDNFP23560 AC140113.3-201ENST00000605663 199 ntBASIC19.92■□□□□ 0.78
BDNFP23560 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BDNFP23560 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.92■□□□□ 0.78
BDNFP23560 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BDNFP23560 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
BDNFP23560 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.92■□□□□ 0.78
BDNFP23560 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BDNFP23560 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
BDNFP23560 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BDNFP23560 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.91■□□□□ 0.78
BDNFP23560 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.91■□□□□ 0.78
BDNFP23560 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.91■□□□□ 0.78
BDNFP23560 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 TSPY5P-201ENST00000426936 936 ntBASIC19.91■□□□□ 0.78
BDNFP23560 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.91■□□□□ 0.78
BDNFP23560 MCCD1P1-208ENST00000445732 328 ntBASIC19.91■□□□□ 0.78
BDNFP23560 AC063952.2-201ENST00000498792 1227 ntBASIC19.91■□□□□ 0.78
BDNFP23560 AL441883.1-201ENST00000566170 1045 ntBASIC19.91■□□□□ 0.78
BDNFP23560 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.91■□□□□ 0.78
BDNFP23560 AL512353.2-201ENST00000448759 1962 ntBASIC19.91■□□□□ 0.78
BDNFP23560 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.91■□□□□ 0.78
BDNFP23560 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.91■□□□□ 0.78
BDNFP23560 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
BDNFP23560 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.91■□□□□ 0.78
BDNFP23560 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
BDNFP23560 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BDNFP23560 AC036111.1-201ENST00000533973 1582 ntBASIC19.91■□□□□ 0.78
BDNFP23560 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.9■□□□□ 0.78
BDNFP23560 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
BDNFP23560 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.9■□□□□ 0.78
BDNFP23560 AC022616.7-201ENST00000525383 220 ntBASIC19.9■□□□□ 0.78
BDNFP23560 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.9■□□□□ 0.78
BDNFP23560 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 AL031432.5-201ENST00000641059 760 ntBASIC19.9■□□□□ 0.78
BDNFP23560 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
BDNFP23560 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.9■□□□□ 0.78
BDNFP23560 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
BDNFP23560 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BDNFP23560 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.9■□□□□ 0.78
BDNFP23560 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
BDNFP23560 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
BDNFP23560 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BDNFP23560 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BDNFP23560 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
BDNFP23560 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BDNFP23560 RCC2P3-201ENST00000418112 1537 ntBASIC19.89■□□□□ 0.77
BDNFP23560 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.89■□□□□ 0.77
BDNFP23560 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
BDNFP23560 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.89■□□□□ 0.77
BDNFP23560 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.89■□□□□ 0.77
BDNFP23560 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.89■□□□□ 0.77
BDNFP23560 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.89■□□□□ 0.77
BDNFP23560 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BDNFP23560 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.89■□□□□ 0.77
BDNFP23560 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.89■□□□□ 0.77
BDNFP23560 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
BDNFP23560 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BDNFP23560 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
BDNFP23560 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BDNFP23560 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BDNFP23560 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms