Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HOXC11O43248 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HOXC11O43248 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXC11O43248 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXC11O43248 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
HOXC11O43248 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXC11O43248 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC11O43248 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC11O43248 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC11O43248 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC11O43248 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC11O43248 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC11O43248 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.24■□□□□ 0.67
HOXC11O43248 AC092597.1-201ENST00000487352 616 ntBASIC19.24■□□□□ 0.67
HOXC11O43248 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 KRT18P56-201ENST00000507275 550 ntBASIC19.24■□□□□ 0.67
HOXC11O43248 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.24■□□□□ 0.67
HOXC11O43248 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.24■□□□□ 0.67
HOXC11O43248 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
HOXC11O43248 AC093458.2-201ENST00000623150 629 ntBASIC19.24■□□□□ 0.67
HOXC11O43248 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
HOXC11O43248 RCC2P3-201ENST00000418112 1537 ntBASIC19.24■□□□□ 0.67
HOXC11O43248 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC11O43248 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HOXC11O43248 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC11O43248 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC11O43248 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HOXC11O43248 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
HOXC11O43248 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC11O43248 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.23■□□□□ 0.67
HOXC11O43248 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.23■□□□□ 0.67
HOXC11O43248 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC11O43248 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC11O43248 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
HOXC11O43248 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC11O43248 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
HOXC11O43248 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HOXC11O43248 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC11O43248 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC11O43248 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC11O43248 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HOXC11O43248 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC11O43248 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.22■□□□□ 0.67
HOXC11O43248 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC11O43248 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC11O43248 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC11O43248 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC11O43248 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC11O43248 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HOXC11O43248 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC11O43248 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC11O43248 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.22■□□□□ 0.67
HOXC11O43248 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.22■□□□□ 0.67
HOXC11O43248 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC11O43248 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.22■□□□□ 0.67
HOXC11O43248 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC11O43248 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC11O43248 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HOXC11O43248 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
HOXC11O43248 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC11O43248 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC11O43248 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 IRX1P1-201ENST00000438849 1838 ntBASIC19.21■□□□□ 0.67
HOXC11O43248 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.21■□□□□ 0.67
HOXC11O43248 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
HOXC11O43248 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.21■□□□□ 0.67
HOXC11O43248 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.21■□□□□ 0.67
HOXC11O43248 AL645929.1-201ENST00000420084 975 ntBASIC19.21■□□□□ 0.67
HOXC11O43248 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.21■□□□□ 0.67
HOXC11O43248 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.21■□□□□ 0.67
HOXC11O43248 KRT8P7-201ENST00000533003 1432 ntBASIC19.21■□□□□ 0.67
HOXC11O43248 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms