Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
HMGB3O15347 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC15.22■□□□□ 0.03
HMGB3O15347 AC091305.1-201ENST00000479476 895 ntBASIC15.22■□□□□ 0.03
HMGB3O15347 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC15.22■□□□□ 0.03
HMGB3O15347 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HMGB3O15347 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
HMGB3O15347 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HMGB3O15347 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGB3O15347 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGB3O15347 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HMGB3O15347 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HMGB3O15347 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGB3O15347 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.21■□□□□ 0.03
HMGB3O15347 CYP21A1P-202ENST00000354927 1481 ntBASIC15.21■□□□□ 0.03
HMGB3O15347 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC15.21■□□□□ 0.03
HMGB3O15347 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC15.21■□□□□ 0.03
HMGB3O15347 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
HMGB3O15347 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 EDA-201ENST00000338901 1233 ntBASIC15.21■□□□□ 0.03
HMGB3O15347 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC15.21■□□□□ 0.03
HMGB3O15347 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC15.21■□□□□ 0.03
HMGB3O15347 KRT18P20-201ENST00000548986 1279 ntBASIC15.21■□□□□ 0.03
HMGB3O15347 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC15.21■□□□□ 0.03
HMGB3O15347 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC15.21■□□□□ 0.03
HMGB3O15347 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC15.21■□□□□ 0.03
HMGB3O15347 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.21■□□□□ 0.03
HMGB3O15347 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGB3O15347 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.21■□□□□ 0.02
HMGB3O15347 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC15.21■□□□□ 0.02
HMGB3O15347 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HMGB3O15347 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HMGB3O15347 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
HMGB3O15347 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HMGB3O15347 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
HMGB3O15347 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
HMGB3O15347 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.2■□□□□ 0.02
HMGB3O15347 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 AC106739.1-201ENST00000617035 715 ntBASIC15.2■□□□□ 0.02
HMGB3O15347 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
HMGB3O15347 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HMGB3O15347 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB3O15347 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB3O15347 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HMGB3O15347 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 AC019069.1-201ENST00000610008 1333 ntBASIC15.19■□□□□ 0.02
HMGB3O15347 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB3O15347 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB3O15347 EFTUD1P1-204ENST00000560401 1798 ntBASIC15.19■□□□□ 0.02
HMGB3O15347 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms