Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGN4O00479 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGN4O00479 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGN4O00479 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGN4O00479 AC135050.7-201ENST00000624508 2218 ntBASIC17.59■□□□□ 0.41
HMGN4O00479 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
HMGN4O00479 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.59■□□□□ 0.41
HMGN4O00479 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
HMGN4O00479 KRT16P1-201ENST00000399124 1418 ntBASIC17.59■□□□□ 0.41
HMGN4O00479 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGN4O00479 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGN4O00479 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.59■□□□□ 0.41
HMGN4O00479 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.59■□□□□ 0.41
HMGN4O00479 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGN4O00479 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGN4O00479 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.59■□□□□ 0.41
HMGN4O00479 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGN4O00479 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HMGN4O00479 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGN4O00479 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGN4O00479 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGN4O00479 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGN4O00479 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HMGN4O00479 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGN4O00479 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.58■□□□□ 0.41
HMGN4O00479 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGN4O00479 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.58■□□□□ 0.41
HMGN4O00479 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.58■□□□□ 0.41
HMGN4O00479 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGN4O00479 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGN4O00479 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
HMGN4O00479 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGN4O00479 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGN4O00479 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGN4O00479 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGN4O00479 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGN4O00479 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGN4O00479 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
HMGN4O00479 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.58■□□□□ 0.4
HMGN4O00479 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGN4O00479 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGN4O00479 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGN4O00479 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGN4O00479 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGN4O00479 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HMGN4O00479 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGN4O00479 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGN4O00479 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGN4O00479 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 MTMR9LP-203ENST00000426597 1545 ntBASIC17.57■□□□□ 0.4
HMGN4O00479 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 AC007613.1-201ENST00000572811 2597 ntBASIC17.57■□□□□ 0.4
HMGN4O00479 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HMGN4O00479 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 AC004951.3-201ENST00000418645 1148 ntBASIC17.57■□□□□ 0.4
HMGN4O00479 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGN4O00479 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.57■□□□□ 0.4
HMGN4O00479 RARRES2P10-201ENST00000564312 460 ntBASIC17.57■□□□□ 0.4
HMGN4O00479 AF186192.3-201ENST00000583427 947 ntBASIC17.57■□□□□ 0.4
HMGN4O00479 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGN4O00479 CR392000.1-201ENST00000624770 1228 ntBASIC17.57■□□□□ 0.4
HMGN4O00479 AC068587.9-201ENST00000641814 219 ntBASIC17.57■□□□□ 0.4
HMGN4O00479 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGN4O00479 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HMGN4O00479 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.57■□□□□ 0.4
HMGN4O00479 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGN4O00479 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGN4O00479 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGN4O00479 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
HMGN4O00479 KRT8P32-201ENST00000512863 1461 ntBASIC17.56■□□□□ 0.4
HMGN4O00479 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HMGN4O00479 KRT8P3-201ENST00000519669 1449 ntBASIC17.56■□□□□ 0.4
HMGN4O00479 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.56■□□□□ 0.4
HMGN4O00479 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGN4O00479 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGN4O00479 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGN4O00479 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HMGN4O00479 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGN4O00479 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGN4O00479 AC026271.3-201ENST00000571884 352 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms