Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSH5O43196 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSH5O43196 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH5O43196 Y_RNA.258-201ENST00000364613 105 ntBASIC5.96□□□□□ -1.46
MSH5O43196 SNORA70.4-201ENST00000365509 134 ntBASIC5.96□□□□□ -1.46
MSH5O43196 RNU6-1177P-201ENST00000391058 104 ntBASIC5.96□□□□□ -1.46
MSH5O43196 SUMO2P12-201ENST00000405924 140 ntBASIC5.96□□□□□ -1.46
MSH5O43196 RN7SL810P-201ENST00000493031 276 ntBASIC5.96□□□□□ -1.46
MSH5O43196 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC5.96□□□□□ -1.46
MSH5O43196 RNA5SP143-201ENST00000516936 115 ntBASIC5.96□□□□□ -1.46
MSH5O43196 AP000867.2-201ENST00000532468 320 ntBASIC5.96□□□□□ -1.46
MSH5O43196 AC015912.2-201ENST00000571053 181 ntBASIC5.96□□□□□ -1.46
MSH5O43196 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH5O43196 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH5O43196 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC5.96□□□□□ -1.46
MSH5O43196 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
MSH5O43196 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH5O43196 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH5O43196 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH5O43196 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH5O43196 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH5O43196 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH5O43196 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH5O43196 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSH5O43196 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH5O43196 RNA5SP151-201ENST00000365632 117 ntBASIC5.95□□□□□ -1.46
MSH5O43196 RNU1-13P-201ENST00000384499 162 ntBASIC5.95□□□□□ -1.46
MSH5O43196 RNA5SP317-201ENST00000410176 116 ntBASIC5.95□□□□□ -1.46
MSH5O43196 RNA5SP311-201ENST00000411290 116 ntBASIC5.95□□□□□ -1.46
MSH5O43196 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC5.95□□□□□ -1.46
MSH5O43196 RN7SL542P-201ENST00000467147 294 ntBASIC5.95□□□□□ -1.46
MSH5O43196 RN7SL636P-201ENST00000497504 294 ntBASIC5.95□□□□□ -1.46
MSH5O43196 RNA5SP446-201ENST00000515955 82 ntBASIC5.95□□□□□ -1.46
MSH5O43196 RNA5SP315-201ENST00000516340 116 ntBASIC5.95□□□□□ -1.46
MSH5O43196 RNA5SP312-201ENST00000517068 116 ntBASIC5.95□□□□□ -1.46
MSH5O43196 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.95□□□□□ -1.46
MSH5O43196 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC5.95□□□□□ -1.46
MSH5O43196 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH5O43196 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
MSH5O43196 AC010733.2-201ENST00000589496 5702 ntBASIC5.94□□□□□ -1.46
MSH5O43196 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSH5O43196 SNORD74.4-201ENST00000364129 80 ntBASIC5.94□□□□□ -1.46
MSH5O43196 RPS26P28-201ENST00000470806 348 ntBASIC5.94□□□□□ -1.46
MSH5O43196 SNORA62.6-201ENST00000606322 83 ntBASIC5.94□□□□□ -1.46
MSH5O43196 AC007318.2-201ENST00000620999 243 ntBASIC5.94□□□□□ -1.46
MSH5O43196 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.94□□□□□ -1.46
MSH5O43196 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSH5O43196 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSH5O43196 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
MSH5O43196 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH5O43196 AL136164.3-201ENST00000624429 3978 ntBASIC5.93□□□□□ -1.46
MSH5O43196 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
MSH5O43196 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
MSH5O43196 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.93□□□□□ -1.46
MSH5O43196 RNA5SP215-201ENST00000363440 122 ntBASIC5.93□□□□□ -1.46
MSH5O43196 RNU6-645P-201ENST00000364649 106 ntBASIC5.93□□□□□ -1.46
MSH5O43196 SCARNA15.3-201ENST00000626315 122 ntBASIC5.93□□□□□ -1.46
MSH5O43196 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH5O43196 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC5.93□□□□□ -1.46
MSH5O43196 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH5O43196 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH5O43196 MIR659-201ENST00000384963 97 ntBASIC5.92□□□□□ -1.46
MSH5O43196 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSH5O43196 AC073869.9-201ENST00000641610 120 ntBASIC5.92□□□□□ -1.46
MSH5O43196 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH5O43196 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.92□□□□□ -1.46
MSH5O43196 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
MSH5O43196 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.92□□□□□ -1.46
MSH5O43196 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH5O43196 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.91□□□□□ -1.46
MSH5O43196 RNU6ATAC42P-201ENST00000408637 95 ntBASIC5.91□□□□□ -1.46
MSH5O43196 HLA-N-201ENST00000437516 135 ntBASIC5.91□□□□□ -1.46
MSH5O43196 MIR548V-201ENST00000584165 80 ntBASIC5.91□□□□□ -1.46
MSH5O43196 MIR3653-201ENST00000625572 110 ntBASIC5.91□□□□□ -1.46
MSH5O43196 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
MSH5O43196 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSH5O43196 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSH5O43196 SNORD38B-201ENST00000384690 67 ntBASIC5.9□□□□□ -1.46
MSH5O43196 SNORD38B-202ENST00000625943 69 ntBASIC5.9□□□□□ -1.46
MSH5O43196 U6.100-201ENST00000636230 99 ntBASIC5.9□□□□□ -1.46
MSH5O43196 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSH5O43196 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSH5O43196 AC107068.1-201ENST00000563286 4218 ntBASIC5.9□□□□□ -1.47
MSH5O43196 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSH5O43196 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH5O43196 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
MSH5O43196 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH5O43196 SNORD114-6-201ENST00000364393 72 ntBASIC5.89□□□□□ -1.47
MSH5O43196 RNU6-302P-201ENST00000365249 107 ntBASIC5.89□□□□□ -1.47
MSH5O43196 Y_RNA.333-201ENST00000365274 102 ntBASIC5.89□□□□□ -1.47
MSH5O43196 RNA5SP283-201ENST00000365604 119 ntBASIC5.89□□□□□ -1.47
MSH5O43196 MIR451A-201ENST00000385059 72 ntBASIC5.89□□□□□ -1.47
MSH5O43196 RNU6-269P-201ENST00000391077 97 ntBASIC5.89□□□□□ -1.47
MSH5O43196 MIR921-201ENST00000401133 56 ntBASIC5.89□□□□□ -1.47
MSH5O43196 SNORA31.10-201ENST00000516482 106 ntBASIC5.89□□□□□ -1.47
MSH5O43196 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH5O43196 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
MSH5O43196 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH5O43196 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH5O43196 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms