RNA–Protein interactions for RNA: ENST00000457368.2

NEDD1-204, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 2 BASIC

Gene NEDD1, Length 3,162 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-204ENST00000457368 AEBP2Q6ZN18 517 aaPredicted RBP7.91□□□□□ -1.14
NEDD1-204ENST00000457368 CHIC1Q5VXU3 224 aa7.41□□□□□ -1.22
NEDD1-204ENST00000457368 POTEDQ86YR6 584 aa6.75□□□□□ -1.33
NEDD1-204ENST00000457368 SENP3Q9H4L4 574 aaPredicted RBP6.68□□□□□ -1.34
NEDD1-204ENST00000457368 PHF23Q9BUL5 403 aaPredicted RBP6.68□□□□□ -1.34
NEDD1-204ENST00000457368 FOXD1Q16676 465 aa6.3□□□□□ -1.4
NEDD1-204ENST00000457368 ADRA2BP18089 450 aa5.98□□□□□ -1.45
NEDD1-204ENST00000457368 PIAS4Q8N2W9 510 aaPredicted RBP5.98□□□□□ -1.45
NEDD1-204ENST00000457368 PPP6R1Q9UPN7 881 aa5.95□□□□□ -1.46
NEDD1-204ENST00000457368 PLPPR3Q6T4P5 718 aa5.94□□□□□ -1.46
NEDD1-204ENST00000457368 MSH5O43196 834 aa5.93□□□□□ -1.46
NEDD1-204ENST00000457368 NISCHQ9Y2I1 1504 aa5.64□□□□□ -1.51
NEDD1-204ENST00000457368 MAPK8IP2Q13387 824 aaPredicted RBP5.51□□□□□ -1.53
NEDD1-204ENST00000457368 DCAF8L1A6NGE4 600 aa5.43□□□□□ -1.54
NEDD1-204ENST00000457368 SCAF1Q9H7N4 1312 aaKnown RBP5.31□□□□□ -1.56
NEDD1-204ENST00000457368 ABCC9O60706 1549 aa5.26□□□□□ -1.57
NEDD1-204ENST00000457368 CACNB1Q02641 598 aaPredicted RBP5.26□□□□□ -1.57
NEDD1-204ENST00000457368 PPP4R3CPQ6ZMV5 832 aa5.26□□□□□ -1.57
NEDD1-204ENST00000457368 DMRT2Q9Y5R5 561 aa5.25□□□□□ -1.57
NEDD1-204ENST00000457368 POTEHQ6S545 545 aa5.16□□□□□ -1.58
NEDD1-204ENST00000457368 CCDC180Q9P1Z9 1646 aa5.15□□□□□ -1.58
NEDD1-204ENST00000457368 DNAJC5BQ9UF47 199 aa5.13□□□□□ -1.59
NEDD1-204ENST00000457368 CNKSR2Q8WXI2 1034 aa5.08□□□□□ -1.6
NEDD1-204ENST00000457368 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.02□□□□□ -1.61
NEDD1-204ENST00000457368 HOXD11P31277 338 aaPredicted RBP5.01□□□□□ -1.61
NEDD1-204ENST00000457368 NCBP3Q53F19 620 aaKnown RBP5□□□□□ -1.61
NEDD1-204ENST00000457368 RNF216Q9NWF9 866 aaPredicted RBP5□□□□□ -1.61
NEDD1-204ENST00000457368 NPM3O75607 178 aaKnown RBP4.98□□□□□ -1.61
NEDD1-204ENST00000457368 RB1CC1Q8TDY2 1594 aa4.98□□□□□ -1.61
NEDD1-204ENST00000457368 KCNA4P22459 653 aa4.97□□□□□ -1.61
NEDD1-204ENST00000457368 RNF39Q9H2S5 420 aa4.96□□□□□ -1.61
NEDD1-204ENST00000457368 NACADO15069 1562 aa4.94□□□□□ -1.62
NEDD1-204ENST00000457368 DNAJC5Q9H3Z4 198 aa4.9□□□□□ -1.62
NEDD1-204ENST00000457368 CAPN15O75808 1086 aa4.89□□□□□ -1.63
NEDD1-204ENST00000457368 MYO15BQ96JP2 1530 aa4.88□□□□□ -1.63
NEDD1-204ENST00000457368 C1QBPQ07021 282 aaKnown RBP4.87□□□□□ -1.63
NEDD1-204ENST00000457368 SHROOM4Q9ULL8 1493 aa4.87□□□□□ -1.63
NEDD1-204ENST00000457368 SPINK5Q9NQ38 1064 aaPredicted RBP4.86□□□□□ -1.63
NEDD1-204ENST00000457368 TRHP20396 242 aaPredicted RBP4.85□□□□□ -1.63
NEDD1-204ENST00000457368 BICRAQ9NZM4 1560 aa4.85□□□□□ -1.63
NEDD1-204ENST00000457368 PABPN1Q86U42 306 aaKnown RBP eCLIP4.84□□□□□ -1.63
NEDD1-204ENST00000457368 ABCB7O75027 752 aa4.83□□□□□ -1.64
NEDD1-204ENST00000457368 U3KPZ7 1027 aaPredicted RBP4.81□□□□□ -1.64
NEDD1-204ENST00000457368 CECR2Q9BXF3 1484 aa4.8□□□□□ -1.64
NEDD1-204ENST00000457368 UNC13AQ9UPW8 1703 aa4.79□□□□□ -1.64
NEDD1-204ENST00000457368 CC2D2AQ9P2K1 1620 aa4.77□□□□□ -1.65
NEDD1-204ENST00000457368 SLC4A2P04920 1241 aa4.74□□□□□ -1.65
NEDD1-204ENST00000457368 EIF4G1Q04637 1599 aaKnown RBP4.73□□□□□ -1.65
NEDD1-204ENST00000457368 DCAF1Q9Y4B6 1507 aa4.72□□□□□ -1.65
NEDD1-204ENST00000457368 CUX2O14529 1486 aa4.71□□□□□ -1.66
NEDD1-204ENST00000457368 DSG3P32926 999 aa4.69□□□□□ -1.66
NEDD1-204ENST00000457368 DCAF8L2P0C7V8 631 aa4.67□□□□□ -1.66
NEDD1-204ENST00000457368 SLC4A1APQ9BWU0 796 aaKnown RBP4.67□□□□□ -1.66
NEDD1-204ENST00000457368 ZCCHC6Q5VYS8 1495 aaKnown RBP4.64□□□□□ -1.67
NEDD1-204ENST00000457368 POLA2Q14181 598 aa4.63□□□□□ -1.67
NEDD1-204ENST00000457368 ZNF219Q9P2Y4 722 aaPredicted RBP4.62□□□□□ -1.67
NEDD1-204ENST00000457368 SCRIBQ14160 1630 aa4.61□□□□□ -1.67
NEDD1-204ENST00000457368 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.59□□□□□ -1.68
NEDD1-204ENST00000457368 HNRNPUL2Q1KMD3 747 aaKnown RBP4.59□□□□□ -1.68
NEDD1-204ENST00000457368 SAMD1Q6SPF0 538 aaPredicted RBP4.59□□□□□ -1.68
NEDD1-204ENST00000457368 NCAPD3P42695 1498 aa4.58□□□□□ -1.68
NEDD1-204ENST00000457368 ATF5Q9Y2D1 282 aaPredicted RBP4.56□□□□□ -1.68
NEDD1-204ENST00000457368 ERCC6Q03468 1493 aa4.56□□□□□ -1.68
NEDD1-204ENST00000457368 MYCNP04198 464 aaPredicted RBP4.55□□□□□ -1.68
NEDD1-204ENST00000457368 APLP2Q06481 763 aa4.55□□□□□ -1.68
NEDD1-204ENST00000457368 SP7Q8TDD2 431 aaPredicted RBP4.55□□□□□ -1.68
NEDD1-204ENST00000457368 FOXD4L1Q9NU39 408 aa4.53□□□□□ -1.68
NEDD1-204ENST00000457368 ZBTB22O15209 634 aa4.52□□□□□ -1.69
NEDD1-204ENST00000457368 HMGXB3Q12766 1538 aa4.51□□□□□ -1.69
NEDD1-204ENST00000457368 OSCARQ8IYS5 282 aa4.51□□□□□ -1.69
NEDD1-204ENST00000457368 THOC2Q8NI27 1593 aaKnown RBP4.51□□□□□ -1.69
NEDD1-204ENST00000457368 ATAD2BQ9ULI0 1458 aa4.5□□□□□ -1.69
NEDD1-204ENST00000457368 EHMT2Q96KQ7 1210 aa4.49□□□□□ -1.69
NEDD1-204ENST00000457368 TRIM41Q8WV44 630 aa4.48□□□□□ -1.69
NEDD1-204ENST00000457368 SMARCA2P51531 1590 aa4.48□□□□□ -1.69
NEDD1-204ENST00000457368 LAMC3Q9Y6N6 1575 aa4.47□□□□□ -1.69
NEDD1-204ENST00000457368 NESP48681 1621 aa4.46□□□□□ -1.7
NEDD1-204ENST00000457368 RBM42Q9BTD8 480 aaKnown RBP4.45□□□□□ -1.7
NEDD1-204ENST00000457368 CHRDL2Q6WN34 429 aa4.45□□□□□ -1.7
NEDD1-204ENST00000457368 PDS5BQ9NTI5 1447 aa4.45□□□□□ -1.7
NEDD1-204ENST00000457368 PEG3Q9GZU2 1588 aa4.44□□□□□ -1.7
NEDD1-204ENST00000457368 PCDH10Q9P2E7 1040 aa4.44□□□□□ -1.7
NEDD1-204ENST00000457368 CLEC11AQ9Y240 323 aa4.44□□□□□ -1.7
NEDD1-204ENST00000457368 WDR62O43379 1518 aa4.43□□□□□ -1.7
NEDD1-204ENST00000457368 MRC2Q9UBG0 1479 aa4.42□□□□□ -1.7
NEDD1-204ENST00000457368 SMARCA4P51532 1647 aa4.41□□□□□ -1.7
NEDD1-204ENST00000457368 BAZ1BQ9UIG0 1483 aaKnown RBP4.41□□□□□ -1.7
NEDD1-204ENST00000457368 BAZ1AQ9NRL2 1556 aaPredicted RBP4.4□□□□□ -1.71
NEDD1-204ENST00000457368 CADPSQ9ULU8 1353 aa4.39□□□□□ -1.71
NEDD1-204ENST00000457368 HAX1O00165 279 aa4.38□□□□□ -1.71
NEDD1-204ENST00000457368 KIF21AQ7Z4S6 1674 aa4.38□□□□□ -1.71
NEDD1-204ENST00000457368 REM2Q8IYK8 340 aaPredicted RBP4.36□□□□□ -1.71
NEDD1-204ENST00000457368 RIMBP3CA6NJZ7 1639 aa4.35□□□□□ -1.71
NEDD1-204ENST00000457368 RIMBP3BA6NNM3 1639 aa4.35□□□□□ -1.71
NEDD1-204ENST00000457368 RIMBP3Q9UFD9 1639 aa4.35□□□□□ -1.71
NEDD1-204ENST00000457368 FBLN2P98095 1184 aa4.35□□□□□ -1.71
NEDD1-204ENST00000457368 PITPNM1O00562 1244 aa4.34□□□□□ -1.71
NEDD1-204ENST00000457368 CEP164Q9UPV0 1460 aa4.34□□□□□ -1.71
NEDD1-204ENST00000457368 ZBTB12Q9Y330 459 aaPredicted RBP4.34□□□□□ -1.72
NEDD1-204ENST00000457368 ARHGEF11O15085 1522 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms