RNA–Protein interactions for RNA: ENST00000408999.3

RGPD4-201, Transcript of RANBP2-like and GRIP domain containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RGPD4, Length 5,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGPD4-201ENST00000408999 USP34Q70CQ2 3546 aa7.11□□□□□ -1.27
RGPD4-201ENST00000408999 GOLGB1Q14789 3259 aaKnown RBP7.01□□□□□ -1.29
RGPD4-201ENST00000408999 UTRNP46939 3433 aa6.92□□□□□ -1.3
RGPD4-201ENST00000408999 MYO15BQ96JP2 1530 aa6.89□□□□□ -1.31
RGPD4-201ENST00000408999 NISCHQ9Y2I1 1504 aa6.81□□□□□ -1.32
RGPD4-201ENST00000408999 EP400Q96L91 3159 aa6.81□□□□□ -1.32
RGPD4-201ENST00000408999 PPARGC1BQ86YN6 1023 aaKnown RBP6.75□□□□□ -1.33
RGPD4-201ENST00000408999 DCAF8L2P0C7V8 631 aa6.71□□□□□ -1.33
RGPD4-201ENST00000408999 PCNTO95613 3336 aa6.63□□□□□ -1.35
RGPD4-201ENST00000408999 SCAF1Q9H7N4 1312 aaKnown RBP6.56□□□□□ -1.36
RGPD4-201ENST00000408999 SRCAPQ6ZRS2 3230 aa6.54□□□□□ -1.36
RGPD4-201ENST00000408999 CENPFP49454 3210 aa6.46□□□□□ -1.38
RGPD4-201ENST00000408999 SHROOM4Q9ULL8 1493 aa6.38□□□□□ -1.39
RGPD4-201ENST00000408999 SUPT5HO00267 1087 aaKnown RBP6.36□□□□□ -1.39
RGPD4-201ENST00000408999 XIRP2A4UGR9 3374 aa6.35□□□□□ -1.39
RGPD4-201ENST00000408999 HRCP23327 699 aa6.35□□□□□ -1.39
RGPD4-201ENST00000408999 VCANP13611 3396 aa6.34□□□□□ -1.39
RGPD4-201ENST00000408999 LAMA3Q16787 3333 aa6.33□□□□□ -1.4
RGPD4-201ENST00000408999 ZFHX3Q15911 3703 aa6.27□□□□□ -1.41
RGPD4-201ENST00000408999 FAM9AQ8IZU1 332 aaPredicted RBP6.22□□□□□ -1.41
RGPD4-201ENST00000408999 CDH23Q9H251 3354 aa6.19□□□□□ -1.42
RGPD4-201ENST00000408999 LAMA2P24043 3122 aaKnown RBP6.15□□□□□ -1.42
RGPD4-201ENST00000408999 BRCA2P51587 3418 aa6.15□□□□□ -1.43
RGPD4-201ENST00000408999 NEUROD1Q13562 356 aa6.13□□□□□ -1.43
RGPD4-201ENST00000408999 EHMT2Q96KQ7 1210 aa6.12□□□□□ -1.43
RGPD4-201ENST00000408999 PRKCSHP14314 528 aaPredicted RBP6.12□□□□□ -1.43
RGPD4-201ENST00000408999 WDFY3Q8IZQ1 3526 aa6.07□□□□□ -1.44
RGPD4-201ENST00000408999 DNAH14Q0VDD8 3507 aa6.02□□□□□ -1.45
RGPD4-201ENST00000408999 CEP350Q5VT06 3117 aa6□□□□□ -1.45
RGPD4-201ENST00000408999 LOC105371045A0A1W2PR82 267 aa5.98□□□□□ -1.45
RGPD4-201ENST00000408999 PCGF6Q9BYE7 350 aa5.96□□□□□ -1.46
RGPD4-201ENST00000408999 APLP2Q06481 763 aa5.95□□□□□ -1.46
RGPD4-201ENST00000408999 DNAH12Q6ZR08 3092 aa5.93□□□□□ -1.46
RGPD4-201ENST00000408999 SPEGQ15772 3267 aa5.93□□□□□ -1.46
RGPD4-201ENST00000408999 CHIC1Q5VXU3 224 aa5.92□□□□□ -1.46
RGPD4-201ENST00000408999 UNC80Q8N2C7 3258 aa5.92□□□□□ -1.46
RGPD4-201ENST00000408999 RANBP2P49792 3224 aaKnown RBP5.92□□□□□ -1.46
RGPD4-201ENST00000408999 TTBK1Q5TCY1 1321 aaPredicted RBP5.91□□□□□ -1.46
RGPD4-201ENST00000408999 TRIM41Q8WV44 630 aa5.91□□□□□ -1.46
RGPD4-201ENST00000408999 MYO15AQ9UKN7 3530 aa5.9□□□□□ -1.46
RGPD4-201ENST00000408999 A0A0C4DFX4 3053 aa5.9□□□□□ -1.46
RGPD4-201ENST00000408999 MSH5O43196 834 aa5.9□□□□□ -1.47
RGPD4-201ENST00000408999 RANGAP1P46060 587 aaPredicted RBP5.88□□□□□ -1.47
RGPD4-201ENST00000408999 CCDC180Q9P1Z9 1646 aa5.88□□□□□ -1.47
RGPD4-201ENST00000408999 BCL11AQ9H165 835 aa5.86□□□□□ -1.47
RGPD4-201ENST00000408999 ABCC9O60706 1549 aa5.84□□□□□ -1.47
RGPD4-201ENST00000408999 CSRNP3Q8WYN3 585 aa5.83□□□□□ -1.48
RGPD4-201ENST00000408999 CFAP54Q96N23 3096 aa5.82□□□□□ -1.48
RGPD4-201ENST00000408999 SZT2Q5T011 3432 aa5.81□□□□□ -1.48
RGPD4-201ENST00000408999 UBTFP17480 764 aaKnown RBP5.8□□□□□ -1.48
RGPD4-201ENST00000408999 ATP1B4Q9UN42 357 aaPredicted RBP5.8□□□□□ -1.48
RGPD4-201ENST00000408999 KCNH8Q96L42 1107 aa5.78□□□□□ -1.48
RGPD4-201ENST00000408999 ANO8Q9HCE9 1232 aaPredicted RBP5.76□□□□□ -1.49
RGPD4-201ENST00000408999 ACIN1Q9UKV3 1341 aaKnown RBP5.74□□□□□ -1.49
RGPD4-201ENST00000408999 GTF3C3Q9Y5Q9 886 aa5.74□□□□□ -1.49
RGPD4-201ENST00000408999 DCAF1Q9Y4B6 1507 aa5.74□□□□□ -1.49
RGPD4-201ENST00000408999 PABPN1Q86U42 306 aaKnown RBP eCLIP5.73□□□□□ -1.49
RGPD4-201ENST00000408999 SPTBN5Q9NRC6 3674 aaKnown RBP5.73□□□□□ -1.49
RGPD4-201ENST00000408999 CCER1Q8TC90 406 aaPredicted RBP5.73□□□□□ -1.49
RGPD4-201ENST00000408999 TSHZ2Q9NRE2 1034 aa5.71□□□□□ -1.5
RGPD4-201ENST00000408999 ZEB1P37275 1124 aaPredicted RBP5.7□□□□□ -1.5
RGPD4-201ENST00000408999 ZFHX4Q86UP3 3567 aa5.7□□□□□ -1.5
RGPD4-201ENST00000408999 PELP1Q8IZL8 1130 aaKnown RBP5.69□□□□□ -1.5
RGPD4-201ENST00000408999 SCRIBQ14160 1630 aa5.69□□□□□ -1.5
RGPD4-201ENST00000408999 C11orf95C9JLR9 678 aaPredicted RBP5.69□□□□□ -1.5
RGPD4-201ENST00000408999 MKI67P46013 3256 aaKnown RBP5.67□□□□□ -1.5
RGPD4-201ENST00000408999 ZCCHC6Q5VYS8 1495 aaKnown RBP5.67□□□□□ -1.5
RGPD4-201ENST00000408999 AEBP2Q6ZN18 517 aaPredicted RBP5.66□□□□□ -1.5
RGPD4-201ENST00000408999 TRIM26Q12899 539 aaPredicted RBP5.64□□□□□ -1.51
RGPD4-201ENST00000408999 BPTFQ12830 3046 aa5.63□□□□□ -1.51
RGPD4-201ENST00000408999 EIF4G1Q04637 1599 aaKnown RBP5.63□□□□□ -1.51
RGPD4-201ENST00000408999 MUC3AQ02505 3323 aa5.62□□□□□ -1.51
RGPD4-201ENST00000408999 LAMA1P25391 3075 aa5.62□□□□□ -1.51
RGPD4-201ENST00000408999 EYSQ5T1H1 3165 aa5.62□□□□□ -1.51
RGPD4-201ENST00000408999 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.61□□□□□ -1.51
RGPD4-201ENST00000408999 HNRNPUL2Q1KMD3 747 aaKnown RBP5.61□□□□□ -1.51
RGPD4-201ENST00000408999 SALL2Q9Y467 1007 aaPredicted RBP5.61□□□□□ -1.51
RGPD4-201ENST00000408999 ITGAEP38570 1179 aa5.6□□□□□ -1.51
RGPD4-201ENST00000408999 CENPBP07199 599 aaPredicted RBP5.59□□□□□ -1.52
RGPD4-201ENST00000408999 VPS13AQ96RL7 3174 aa5.59□□□□□ -1.52
RGPD4-201ENST00000408999 MIER1Q8N108 512 aa5.57□□□□□ -1.52
RGPD4-201ENST00000408999 COL6A3P12111 3177 aa5.57□□□□□ -1.52
RGPD4-201ENST00000408999 MYT1LQ9UL68 1186 aa5.57□□□□□ -1.52
RGPD4-201ENST00000408999 YTHDC1Q96MU7 727 aaKnown RBP5.56□□□□□ -1.52
RGPD4-201ENST00000408999 WDR87Q6ZQQ6 2873 aa5.55□□□□□ -1.52
RGPD4-201ENST00000408999 PLEKHG5O94827 1062 aa5.55□□□□□ -1.52
RGPD4-201ENST00000408999 RB1CC1Q8TDY2 1594 aa5.55□□□□□ -1.52
RGPD4-201ENST00000408999 DMDP11532 3685 aa5.55□□□□□ -1.52
RGPD4-201ENST00000408999 FOXD1Q16676 465 aa5.54□□□□□ -1.52
RGPD4-201ENST00000408999 LOC400499M0QZD8 3231 aa5.54□□□□□ -1.52
RGPD4-201ENST00000408999 NACADO15069 1562 aa5.53□□□□□ -1.52
RGPD4-201ENST00000408999 KDM5BQ9UGL1 1544 aa5.51□□□□□ -1.53
RGPD4-201ENST00000408999 SUPT16HQ9Y5B9 1047 aaKnown RBP5.51□□□□□ -1.53
RGPD4-201ENST00000408999 FAM50AQ14320 339 aaKnown RBP5.5□□□□□ -1.53
RGPD4-201ENST00000408999 CCDC136Q96JN2 1154 aa5.5□□□□□ -1.53
RGPD4-201ENST00000408999 POLR3GLQ9BT43 218 aa5.49□□□□□ -1.53
RGPD4-201ENST00000408999 WDFY4Q6ZS81 3184 aa5.48□□□□□ -1.53
RGPD4-201ENST00000408999 NEFLP07196 543 aa5.48□□□□□ -1.53
RGPD4-201ENST00000408999 FBLN2P98095 1184 aa5.48□□□□□ -1.53
RGPD4-201ENST00000408999 ERICH6Q7L0X2 663 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms