Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.89□□□□□ -1.95
NKX3-2P78367 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.89□□□□□ -1.95
NKX3-2P78367 RNU6-62P-201ENST00000516526 102 ntBASIC2.89□□□□□ -1.95
NKX3-2P78367 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.89□□□□□ -1.95
NKX3-2P78367 POLR3GP1-201ENST00000594073 261 ntBASIC2.89□□□□□ -1.95
NKX3-2P78367 AP003357.1-201ENST00000604497 148 ntBASIC2.89□□□□□ -1.95
NKX3-2P78367 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.89□□□□□ -1.95
NKX3-2P78367 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
NKX3-2P78367 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.88□□□□□ -1.95
NKX3-2P78367 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
NKX3-2P78367 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
NKX3-2P78367 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
NKX3-2P78367 Y_RNA.337-201ENST00000365312 102 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 RNU6-643P-201ENST00000384018 107 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 RNU6-1228P-201ENST00000391014 107 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 MTND4LP9-201ENST00000427694 174 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-2P78367 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.88□□□□□ -1.95
NKX3-2P78367 AC074290.1-201ENST00000448883 135 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 AC016925.1-201ENST00000458303 298 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 RNA5SP20-201ENST00000515976 84 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 RNU6-313P-201ENST00000516317 112 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 AC025647.1-201ENST00000517879 253 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.88□□□□□ -1.95
NKX3-2P78367 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-2P78367 ZNF702P-202ENST00000434269 1966 ntBASIC2.88□□□□□ -1.95
NKX3-2P78367 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
NKX3-2P78367 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
NKX3-2P78367 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX3-2P78367 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.87□□□□□ -1.95
NKX3-2P78367 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
NKX3-2P78367 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
NKX3-2P78367 RNA5SP289-201ENST00000362332 137 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 RNU1-109P-201ENST00000383960 147 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 RNU6-1323P-201ENST00000384025 107 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 MIR181A2-201ENST00000384863 110 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 RNU6-1168P-201ENST00000390831 104 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 RNU6-735P-201ENST00000410612 107 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 RNU4-53P-201ENST00000410828 140 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 AC016909.1-201ENST00000415916 166 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 snoU13.26-201ENST00000459452 105 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 RNA5SP76-201ENST00000516277 87 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 AC018630.3-201ENST00000542637 96 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
NKX3-2P78367 AC127455.1-201ENST00000565496 145 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 MIR3199-1-201ENST00000582434 88 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 AC005972.2-201ENST00000604690 348 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
NKX3-2P78367 AC016717.2-201ENST00000609089 5141 ntBASIC2.87□□□□□ -1.95
NKX3-2P78367 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
NKX3-2P78367 AC093010.3-201ENST00000570269 15214 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 RNU6-271P-201ENST00000363858 105 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 RNU6-376P-201ENST00000384731 106 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 SNORA40-201ENST00000388090 126 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 MIR513C-201ENST00000401352 84 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 MIR1278-201ENST00000408753 81 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 RNA5SP511-201ENST00000410487 115 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 AL135786.1-201ENST00000415892 214 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 Z98742.3-201ENST00000418637 326 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 RPL30P13-201ENST00000418873 348 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.86□□□□□ -1.95
NKX3-2P78367 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.86□□□□□ -1.95
NKX3-2P78367 HMGN2P18-201ENST00000450680 270 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 AP004217.1-201ENST00000480579 346 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 RNU6-948P-201ENST00000516374 107 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 RNU6-971P-201ENST00000516920 106 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 SCARNA3-201ENST00000517097 143 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.86□□□□□ -1.95
NKX3-2P78367 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.86□□□□□ -1.95
NKX3-2P78367 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
NKX3-2P78367 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
NKX3-2P78367 RNU6-199P-201ENST00000362954 107 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 RNU6-728P-201ENST00000365375 104 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 RNU6-438P-201ENST00000365561 103 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 AL359511.1-201ENST00000402970 211 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 MICF-203ENST00000432679 129 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 RPL23AP54-201ENST00000495129 419 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 PRELID2P1-201ENST00000552837 301 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 AC112693.2-201ENST00000556538 232 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 AC105245.1-201ENST00000581934 244 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 MIR4635-201ENST00000583759 79 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 MIR6733-201ENST00000635723 61 ntBASIC2.85□□□□□ -1.95
NKX3-2P78367 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
NKX3-2P78367 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
NKX3-2P78367 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.85□□□□□ -1.95
NKX3-2P78367 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
NKX3-2P78367 U8.2-201ENST00000363156 134 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 RNY1P11-201ENST00000363759 113 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 RNU6-743P-201ENST00000364151 106 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 Y_RNA.261-201ENST00000364631 102 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 RNU6-1235P-201ENST00000384559 107 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 Y_RNA.542-201ENST00000384641 111 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 RNU6-136P-201ENST00000384663 107 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 RNU6-768P-201ENST00000384683 107 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 MIR504-201ENST00000385065 83 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 SNORD37.2-201ENST00000391075 66 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 U6atac.2-201ENST00000408644 118 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 Y_RNA.622-201ENST00000411091 108 ntBASIC2.84□□□□□ -1.95
NKX3-2P78367 HMGN2P35-201ENST00000412164 270 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 191.8 ms