Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 KRT8P32-201ENST00000512863 1461 ntBASIC19.79■□□□□ 0.76
USP3Q9Y6I4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 BX664615.1-201ENST00000443558 458 ntBASIC19.78■□□□□ 0.76
USP3Q9Y6I4 ATP5G1P1-201ENST00000448724 379 ntBASIC19.78■□□□□ 0.76
USP3Q9Y6I4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 WWOX-216ENST00000569818 525 ntBASIC19.78■□□□□ 0.76
USP3Q9Y6I4 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 AC141257.4-201ENST00000634557 245 ntBASIC19.78■□□□□ 0.76
USP3Q9Y6I4 AC136944.6-201ENST00000634818 245 ntBASIC19.78■□□□□ 0.76
USP3Q9Y6I4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP3Q9Y6I4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 TNXA-203ENST00000507684 2038 ntBASIC19.77■□□□□ 0.76
USP3Q9Y6I4 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 AC104076.2-201ENST00000448912 469 ntBASIC19.77■□□□□ 0.76
USP3Q9Y6I4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 CR769767.2-201ENST00000622735 460 ntBASIC19.77■□□□□ 0.76
USP3Q9Y6I4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP3Q9Y6I4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
USP3Q9Y6I4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP3Q9Y6I4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 AL109659.2-201ENST00000606809 1674 ntBASIC19.76■□□□□ 0.75
USP3Q9Y6I4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 AC006011.2-201ENST00000621313 1158 ntBASIC19.76■□□□□ 0.75
USP3Q9Y6I4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.76■□□□□ 0.75
USP3Q9Y6I4 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP3Q9Y6I4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms