Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHA3Q9Y5H8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHA3Q9Y5H8 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHA3Q9Y5H8 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.79■□□□□ 0.76
PCDHA3Q9Y5H8 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PCDHA3Q9Y5H8 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHA3Q9Y5H8 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.79■□□□□ 0.76
PCDHA3Q9Y5H8 AC073592.3-201ENST00000625118 1834 ntBASIC19.79■□□□□ 0.76
PCDHA3Q9Y5H8 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 KRASP1-201ENST00000407852 552 ntBASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHA3Q9Y5H8 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
PCDHA3Q9Y5H8 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.75
PCDHA3Q9Y5H8 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.77■□□□□ 0.75
PCDHA3Q9Y5H8 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
PCDHA3Q9Y5H8 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
PCDHA3Q9Y5H8 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
PCDHA3Q9Y5H8 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 AC239809.2-201ENST00000415381 517 ntBASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 AL445675.2-201ENST00000620291 557 ntBASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms