Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 B3GAT3P1-201ENST00000471720 806 ntBASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 LETM1P2-201ENST00000597330 2178 ntBASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 AC120498.9-201ENST00000339021 3867 ntBASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 AC113347.1-201ENST00000413321 391 ntBASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
PCDHB3Q9Y5E6 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHB3Q9Y5E6 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHB3Q9Y5E6 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHB3Q9Y5E6 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHB3Q9Y5E6 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHB3Q9Y5E6 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHB3Q9Y5E6 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.52■□□□□ 0.55
PCDHB3Q9Y5E6 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.52■□□□□ 0.55
PCDHB3Q9Y5E6 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 KRT8P8-201ENST00000434750 1448 ntBASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 HLA-A-209ENST00000638375 975 ntBASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.51■□□□□ 0.55
PCDHB3Q9Y5E6 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 KRT8P9-201ENST00000558927 1449 ntBASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHB3Q9Y5E6 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms